Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq37 131 3e-25 seq202 109 1e-18 seq911 91.5 3e-13 seq562 91.5 3e-13 seq396 89.7 1e-12 seq610 87.8 4e-12 seq336 87.8 4e-12 seq73 87.8 4e-12 seq55 87.8 4e-12 seq20 87.8 4e-12 seq16 87.8 4e-12 seq955 86.0 1e-11 seq326 86.0 1e-11 seq318 86.0 1e-11 seq227 84.2 4e-11 >seq37 Length=1311203 Score = 131 bits (144), Expect = 3e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| |||| |||||| | |||||| || | ||||| |||||| | | Sbjct 1045371 TCTATTCCGTCAATGGTTGATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCT 1045312 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||||| | || | ||| || || || ||||||||||||||||| || || Sbjct 1045311 TTTAAGAGGAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAG 1045252 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCT-GCAGGGTGCCATTGTAGGCATGGCACA 218747 ||||| |||||| || |||||||||||||| ||| | | | ||| | || |||||||| Sbjct 1045251 CATTCTGCCTACCACCATGGTGAGCAGAGTCTTGCAAG-TACTATTATTGGGATGGCACA 1045193 Query 218748 GGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| | |||||| || || || || || | || | || || ||||| |||||| | || Sbjct 1045192 GGATTTTGTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCG 1045133 Query 218808 T 218808 | Sbjct 1045132 T 1045132 Score = 131 bits (144), Expect = 3e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| |||| |||||| | |||||| || | ||||| |||||| | | Sbjct 1170655 TCTATTCCGTCAATGGTTGATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCT 1170714 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||||| | || | ||| || || || ||||||||||||||||| || || Sbjct 1170715 TTTAAGAGGAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAG 1170774 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACA 218747 ||||| |||||| || ||||||||||||| |||| || | ||| | || |||||||| Sbjct 1170775 CATTCTGCCTACCACCATGGTGAGCAGAGTCTTGCA-AGTACTATTATTGGGATGGCACA 1170833 Query 218748 GGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| | |||||| || || || || || | || | || || ||||| |||||| | || Sbjct 1170834 GGATTTTGTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCG 1170893 Query 218808 T 218808 | Sbjct 1170894 T 1170894 >seq202 Length=624202 Score = 109 bits (120), Expect = 1e-18 Identities = 543/853 (64%), Gaps = 25/853 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| |||| ||| ||| |||||||| ||||||||||||| | Sbjct 31108 TCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAGTCGAAGGGGTTCTGG 31167 Query 251623 GCATTGTACTGCTTG--GGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCA 251680 |||||||| |||| | || | | | || | | | || || ||||| ||||| | Sbjct 31168 ACATTGTACATCTTGCCGTATCCCAACGAGC--CCAGCAGCCGATCCGCCACGAACTCGA 31225 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGA 251740 ||| |||||||| || |||||| || | || ||| || | || || || | Sbjct 31226 TGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCACACGGCAGCGCGTCGCACA 31285 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| || | ||| | | || || | | || || | | ||||| | || || Sbjct 31286 CGAACTCTCTCTCGATCTCCACCGCGTTCCGTACGATCGACATCACCCGATCCTCGCTCA 31345 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAG-GAGCTCGCCAAACTGTTG--GTGCAGACCCTCGT 251857 |||| ||| |||| ||| ||||| | | ||| || || | ||||| ||||||| Sbjct 31346 GCTTCTTCCTCAGCAGTGAATACAGCAAACACGCGAA---GTCGCAGTGCAAGCCCTCGT 31402 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||| | ||||||||| | | ||| || ||||| | || || || | |||| Sbjct 31403 CTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCC 31462 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 | || || ||||| || || ||||| | | ||||| || || | | || || | Sbjct 31463 AAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGA 31522 Query 251978 GGCGCTCAGCAAACGACTTG--TCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| || || |||| | || || | | || | ||||| |||||||| Sbjct 31523 TTCGCTCCGCGAAAGACTCGGAGCCGTCG--ATCCATCTCAGGGCCCACTGGGCCTTCTT 31580 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || ||||| || ||||| || | ||||| || | |||| | ||||| Sbjct 31581 CGCGACGCAAGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTT 31640 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| || || || ||||| ||||||||| || |||||| || || ||||| Sbjct 31641 GATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTG 31700 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAAT 252215 | | | ||||| || || | | | ||| ||| | ||| | || | Sbjct 31701 GAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAG 31760 Query 252216 GTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTG 252275 || || | || ||||| ||| | | || |||||| | |||||| | || |||||| Sbjct 31761 ATTTTCAAGGACAATGCCGTCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTG 31820 Query 252276 ACGCTCATCGTCG--TTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AA 252331 | ||| ||||| | | |||| || | | ||| |||||||| || ||| | Sbjct 31821 CCTCTCGCCGTCGGATAGGGCTTCCCA---CTGGCGG--ATGTCCTG--GCATAGGTCGA 31873 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGT 252391 | || || | |||||||| | || | | ||||||||||||||| | | | || |||| Sbjct 31874 CCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTCCCATATTTCTGGGT 31933 Query 252392 ACTTGATTGGGAA 252404 ||| ||| || || Sbjct 31934 ACTGGATCGGAAA 31946 >seq911 Length=157887 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 23557 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 23498 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 23497 AGCCCCAC 23490 >seq562 Length=294620 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142491 GGGTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGT 142550 ||||||| | |||||| ||||||||| |||||||||| || ||||||| || ||||| Sbjct 203164 GGGTGGTCAAGCAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGT 203105 Query 142551 CGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||| Sbjct 203104 CGTGGGTTCGAGCCCCAC 203087 >seq396 Length=418424 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 364944 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 364885 Query 142562 GCCCCAC 142568 ||||||| Sbjct 364884 GCCCCAC 364878 >seq610 Length=269819 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 84370 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84311 Query 142563 CCCCAC 142568 |||||| Sbjct 84310 CCCCAC 84305 >seq336 Length=465855 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 341207 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 341148 Query 142563 CCCCAC 142568 |||||| Sbjct 341147 CCCCAC 341142 >seq73 Length=1043070 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 973930 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 973871 Query 142563 CCCCAC 142568 |||||| Sbjct 973870 CCCCAC 973865 >seq55 Length=1184625 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 928861 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 928920 Query 142563 CCCCAC 142568 |||||| Sbjct 928921 CCCCAC 928926 >seq20 Length=1492784 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 506993 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 506934 Query 142563 CCCCAC 142568 |||||| Sbjct 506933 CCCCAC 506928 >seq16 Length=1599977 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 120913 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 120972 Query 142563 CCCCAC 142568 |||||| Sbjct 120973 CCCCAC 120978 >seq955 Length=148811 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 148787 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 148728 Query 142564 CCCAC 142568 ||||| Sbjct 148727 CCCAC 148723 >seq326 Length=479343 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 149233 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 149174 Query 142564 CCCAC 142568 ||||| Sbjct 149173 CCCAC 149169 >seq318 Length=487340 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 194524 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 194583 Query 142564 CCCAC 142568 ||||| Sbjct 194584 CCCAC 194588 >seq227 Length=592806 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 522721 AGCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 522780 Query 142563 CCCCAC 142568 |||||| Sbjct 522781 CCCCAC 522786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027808064895062