Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq687 118 9e-22 seq59 118 9e-22 seq15 107 2e-18 seq580 104 2e-17 seq54 104 2e-17 seq1309 100 2e-16 seq139 87.8 2e-12 seq1 82.4 6e-11 >seq687 Length=229775 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | || | || || || | || ||||| ||||||||||| ||||| Sbjct 53573 ATACCACCACGCAATCGGAGCACCAAGTGGAGAGTCGATTCCTTTTGAATGTTATAATCA 53514 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||||||| || ||||||||| ||||||| | ||| |||||||| Sbjct 53513 GCAAGCGTGCGACCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGG 53454 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || |||||| || | | |||| ||| || | | ||| Sbjct 53453 GGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACATTATCAATGGTATCCGAGCTTTCA 53394 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||| || || || ||||| || ||||| Sbjct 53393 ACTTCCAAGGTGATTGTCTTACCGGTAAGGGTCTTGACAAAGATTTGCAT 53344 >seq59 Length=1152742 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | || | || || || | || ||||| ||||||||||| ||||| Sbjct 731054 ATACCACCACGCAATCGGAGCACCAAGTGGAGAGTCGATTCCTTTTGAATGTTATAATCA 730995 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||||||| || ||||||||| ||||||| | ||| |||||||| Sbjct 730994 GCAAGCGTGCGACCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGG 730935 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || |||||| || | | |||| ||| || | | ||| Sbjct 730934 GGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACATTATCAATGGTATCCGAGCTTTCA 730875 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||| || || || ||||| || ||||| Sbjct 730874 ACTTCCAAGGTGATTGTCTTACCGGTAAGGGTCTTGACAAAGATTTGCAT 730825 >seq15 Length=1624393 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 114148 TACAAAT-ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 || |||| ||||||||| || | | ||| | ||| | ||||| ||||| ||||||||| Sbjct 1057148 TAGAAATCACCGCCACGGAGACGAAGAACGAGATGGAGGGTAGACTCTTTCTGAATGTTG 1057207 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 ||||| | |||||| ||| || || ||||| |||||| |||| | | ||| ||| Sbjct 1057208 TAATCCGCAAGGGTACGACCATCCTCTAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGG 1057267 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 || || || || || || ||||| |||||| ||| | | |||| ||||| | | Sbjct 1057268 TCAGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAG 1057327 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | || | ||| || || ||||| || || ||||| |||||||| Sbjct 1057328 CTCTCAACCTCGAGAGTGATCGTCTTCCCTGTCAGTGTCTTCACAAATATCTGCAT 1057383 >seq580 Length=281551 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||| || ||||||||||| Sbjct 199852 ATGCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCC 199793 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| || || || |||||| |||| |||||||| ||||| || Sbjct 199792 GCAAGGGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGG 199733 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | || | |||||| | || || Sbjct 199732 GGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCC 199673 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || ||||| |||||||| Sbjct 199672 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 199623 >seq54 Length=1192742 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||| || ||||||||||| Sbjct 263503 ATGCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCC 263444 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| || || || |||||| |||| |||||||| ||||| || Sbjct 263443 GCAAGGGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGG 263384 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | || | |||||| | || || Sbjct 263383 GGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCC 263324 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || ||||| |||||||| Sbjct 263323 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 263274 >seq1309 Length=78448 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || |||||||| || || || || ||||| || || || || ||| ||| Sbjct 62323 CTTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGA 62382 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||| ||||| |||||||| |||||||| || ||||| ||||| || | | | Sbjct 62383 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 62442 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| ||||||| || ||||| || | ||| | || || ||||| || ||||| || | Sbjct 62443 CAATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 62502 Query 114373 AAATCTGCAT 114382 |||||||||| Sbjct 62503 AAATCTGCAT 62512 >seq139 Length=803459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| || || || || ||||| || || || || ||| ||||| Sbjct 751895 TTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATG 751954 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || ||||| |||||||| |||||||| || ||||| ||||| || | | || Sbjct 751955 AGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 752014 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||||| || ||||| || | || | || || ||||| || ||||| || ||| Sbjct 752015 ATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGAAA 752074 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 752075 ATCTGCAT 752082 >seq1 Length=4167794 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || || || ||||||||||| Sbjct 1162830 ATGCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCT 1162889 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| || || || || ||| |||| |||||||| ||||| || Sbjct 1162890 GCGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGG 1162949 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| ||| | | || | |||||||| || ||| Sbjct 1162950 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAAGACTCG 1163009 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| || || || ||||| Sbjct 1163010 ACCTCGAGGGTGATGGTCTTTCCAGTAAGGGTTTTCACGAAGATTTGCAT 1163059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420123227313384