Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq202 322 9e-83 seq1330 313 5e-80 seq801 313 5e-80 >seq202 Length=624202 Score = 322 bits (356), Expect = 9e-83 Identities = 596/865 (69%), Gaps = 12/865 (1%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| || || ||| |||||||||||||| || |||| ||||||||| Sbjct 31941 GATCCAGTACCCAGAAATATGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGC 31882 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 ||||||| | ||||| | |||||| | ||| | ||||| | || || || ||| | Sbjct 31881 CGAGGAGGTCGACCTATGCCAGGACATCCGCCAG-TGGGAAGCCCTATCCGACGGCGAGA 31823 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| || |||| || ||||||||||| ||||| |||||||| ||| ||| | Sbjct 31822 GGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTCCTTGAAA 31763 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 | || || ||||| ||||| ||||| ||| | ||||| ||| ||||||||| | Sbjct 31762 ATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGT 31703 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||| ||||| | || ||| | ||||||| Sbjct 31702 TCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACA 31643 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| ||| |||| || | || ||| | || || || || || || ||| || Sbjct 31642 TCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCTTGCGTCG 31583 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 ||||||||| | ||||| || | |||||||| | |||| | |||| ||| Sbjct 31582 CGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGA---GTCTTTCGCGGAGC 31526 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | | ||||||||| || ||| ||||| || ||||||||||| ||| | | || | Sbjct 31525 GAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATAT 31466 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||||| || || | | ||||| ||||| || ||||| ||||| || ||| Sbjct 31465 TTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGC 31406 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| |||| | ||||| || || | |||| || | || ||| | | Sbjct 31405 GAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC---ACTGCTGAGGAAGA 31349 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGG-AGGCCGTGGAGATCGAGAAGGAG 42941 ||| |||| ||||| | | ||| | |||| | || ||||||||||||| ||| Sbjct 31348 AGCTGAGCGAGGATCGGGTGATGTCGATCGT-ACGGAACGCGGTGGAGATCGAGAGAGAG 31290 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||| | | ||||| |||||| | ||||| || |||||| ||| || ||| ||| Sbjct 31289 TTCGTGTGCGACGCGCTG-CCGTGTGCGCTGGTGGGGATGAACGGCGATCTGATGGGCAC 31231 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 ||||||| ||| ||| || || | || ||| || | |||| | || | ||||| Sbjct 31230 GTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGGCAAGATGTACAA 31171 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | ||||||||||| |||||| ||| || |||| ||||||||||| || Sbjct 31170 TGTCCAGAACCCCTTCGACTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAACTTCTT 31111 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||| ||| || ||| Sbjct 31110 TGAGAAGCGCGTCGGCGAGTATCAG 31086 >seq1330 Length=73179 Score = 313 bits (346), Expect = 5e-80 Identities = 594/865 (69%), Gaps = 12/865 (1%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| ||| || ||| |||||||||||||| || ||| ||||||||| Sbjct 26196 GATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGC 26255 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 ||||||| | ||||| | |||||| | ||| |||||| | || || || ||| | Sbjct 26256 CGAGGAGGTCGACCTATGCCAGGACATCCGCCA-CTGGGAAGCCCTATCCGACGGCGAGA 26314 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| || |||| || ||||||||||| ||||| || ||||| ||| ||| | Sbjct 26315 GGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAA 26374 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 | || || ||||| ||||| ||||| ||| | ||||| ||| ||||||||| | Sbjct 26375 ATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGT 26434 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||| ||||| | || ||| | ||||||| Sbjct 26435 TCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACA 26494 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| ||| |||| || | || ||| | || || || || || |||||| || Sbjct 26495 TCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCG 26554 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 ||||||||| | ||||| || | |||||||| | |||| | |||| ||| Sbjct 26555 CGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGA---GTCTTTCGCGGAGC 26611 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | | || |||||| || ||| ||||| || ||||||||||| ||| | | || | Sbjct 26612 GAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATAT 26671 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||||| || || | | ||||| ||||| || ||||| ||||| || ||| Sbjct 26672 TTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGC 26731 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| |||| | ||||| || || | |||| || | || ||| | | Sbjct 26732 GAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC---ACTGCTGAGGAAGA 26788 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGG-AGGCCGTGGAGATCGAGAAGGAG 42941 ||| | |||| ||||| | | ||| | |||| | || ||||||||||||| |||| Sbjct 26789 AGCTCAGCGAGGATCGGGTTAAGTCGATCGT-ACGGAACGCGGTGGAGATCGAGAGGGAG 26847 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||| | | ||||| |||||| | ||||| || |||||| ||| || ||| ||| Sbjct 26848 TTCGTGTGCGACGCGCTG-CCGTGTGCGCTGGTGGGGATGAACGGCGATCTGATGGGCAC 26906 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 ||||||| ||| ||| || || | || ||| || | |||| | | | ||||| Sbjct 26907 GTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGACAAGATGTACAA 26966 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | ||| ||||| | |||||| ||| || |||| ||||||||||| || Sbjct 26967 TGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAACTTCTT 27026 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||| ||| || ||| Sbjct 27027 TGAGAAGCGCGTCGGCGAGTATCAG 27051 Score = 313 bits (346), Expect = 5e-80 Identities = 594/865 (69%), Gaps = 12/865 (1%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| ||| || ||| |||||||||||||| || ||| ||||||||| Sbjct 46984 GATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGC 46925 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 ||||||| | ||||| | |||||| | ||| |||||| | || || || ||| | Sbjct 46924 CGAGGAGGTCGACCTATGCCAGGACATCCGCCA-CTGGGAAGCCCTATCCGACGGCGAGA 46866 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| || |||| || ||||||||||| ||||| || ||||| ||| ||| | Sbjct 46865 GGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAA 46806 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 | || || ||||| ||||| ||||| ||| | ||||| ||| ||||||||| | Sbjct 46805 ATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGT 46746 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||| ||||| | || ||| | ||||||| Sbjct 46745 TCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACA 46686 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| ||| |||| || | || ||| | || || || || || |||||| || Sbjct 46685 TCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCG 46626 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 ||||||||| | ||||| || | |||||||| | |||| | |||| ||| Sbjct 46625 CGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGA---GTCTTTCGCGGAGC 46569 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | | || |||||| || ||| ||||| || ||||||||||| ||| | | || | Sbjct 46568 GAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATAT 46509 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||||| || || | | ||||| ||||| || ||||| ||||| || ||| Sbjct 46508 TTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGC 46449 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| |||| | ||||| || || | |||| || | || ||| | | Sbjct 46448 GAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC---ACTGCTGAGGAAGA 46392 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGG-AGGCCGTGGAGATCGAGAAGGAG 42941 ||| | |||| ||||| | | ||| | |||| | || ||||||||||||| |||| Sbjct 46391 AGCTCAGCGAGGATCGGGTTAAGTCGATCGT-ACGGAACGCGGTGGAGATCGAGAGGGAG 46333 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||| | | ||||| |||||| | ||||| || |||||| ||| || ||| ||| Sbjct 46332 TTCGTGTGCGACGCGCTG-CCGTGTGCGCTGGTGGGGATGAACGGCGATCTGATGGGCAC 46274 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 ||||||| ||| ||| || || | || ||| || | |||| | | | ||||| Sbjct 46273 GTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGACAAGATGTACAA 46214 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | ||| ||||| | |||||| ||| || |||| ||||||||||| || Sbjct 46213 TGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAACTTCTT 46154 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||| ||| || ||| Sbjct 46153 TGAGAAGCGCGTCGGCGAGTATCAG 46129 >seq801 Length=188201 Score = 313 bits (346), Expect = 5e-80 Identities = 594/865 (69%), Gaps = 12/865 (1%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| ||| || ||| |||||||||||||| || ||| ||||||||| Sbjct 11197 GATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGC 11256 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 ||||||| | ||||| | |||||| | ||| |||||| | || || || ||| | Sbjct 11257 CGAGGAGGTCGACCTATGCCAGGACATCCGCCA-CTGGGAAGCCCTATCCGACGGCGAGA 11315 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| || |||| || ||||||||||| ||||| || ||||| ||| ||| | Sbjct 11316 GGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAA 11375 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 | || || ||||| ||||| ||||| ||| | ||||| ||| ||||||||| | Sbjct 11376 ATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGT 11435 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||| ||||| | || ||| | ||||||| Sbjct 11436 TCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACA 11495 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| ||| |||| || | || ||| | || || || || || |||||| || Sbjct 11496 TCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCG 11555 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 ||||||||| | ||||| || | |||||||| | |||| | |||| ||| Sbjct 11556 CGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGA---GTCTTTCGCGGAGC 11612 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | | || |||||| || ||| ||||| || ||||||||||| ||| | | || | Sbjct 11613 GAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATAT 11672 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||||| || || | | ||||| ||||| || ||||| ||||| || ||| Sbjct 11673 TTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGC 11732 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| |||| | ||||| || || | |||| || | || ||| | | Sbjct 11733 GAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTC---ACTGCTGAGGAAGA 11789 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGG-AGGCCGTGGAGATCGAGAAGGAG 42941 ||| | |||| ||||| | | ||| | |||| | || ||||||||||||| |||| Sbjct 11790 AGCTCAGCGAGGATCGGGTTAAGTCGATCGT-ACGGAACGCGGTGGAGATCGAGAGGGAG 11848 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||| | | ||||| |||||| | ||||| || |||||| ||| || ||| ||| Sbjct 11849 TTCGTGTGCGACGCGCTG-CCGTGTGCGCTGGTGGGGATGAACGGCGATCTGATGGGCAC 11907 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 ||||||| ||| ||| || || | || ||| || | |||| | | | ||||| Sbjct 11908 GTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGACAAGATGTACAA 11967 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | ||| ||||| | |||||| ||| || |||| ||||||||||| || Sbjct 11968 TGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAACTTCTT 12027 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||| ||| || ||| Sbjct 12028 TGAGAAGCGCGTCGGCGAGTATCAG 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944313443148320