Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq100 93.3 3e-14 seq15 91.5 1e-13 seq281 89.7 4e-13 seq687 87.8 1e-12 seq59 87.8 1e-12 >seq100 Length=933141 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || || ||||||||| |||||||| || || Sbjct 405037 CCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC- 404979 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | |||| |||| ||||||||||| || || ||||||||||| ||| ||| Sbjct 404978 AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 404919 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| || | || | | || | ||| || Sbjct 404918 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG---TCGATGGTGTCGGAAGACTC 404862 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 404861 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 404807 >seq15 Length=1624393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || || || || |||||||| || |||||||| || |||||||| || Sbjct 1075516 ACCTCCTCGGAGACGGAGGACAAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCCGC 1075575 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| ||| | || ||||||||||||||||| || || || | |||||||||| Sbjct 1075576 CAAGGTTCGGCCATCTTCCAATTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCC 1075630 >seq281 Length=531459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || || ||||||||| |||||||| || || Sbjct 453603 CCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC- 453545 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | |||| |||| ||||||||||| || || || |||||||| ||| ||| Sbjct 453544 AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGCGG 453485 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| || | || | | || | ||| || Sbjct 453484 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG---TCGATGGTGTCTGAAGACTC 453428 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 453427 AACCTCCAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 453373 >seq687 Length=229775 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || ||||| || |||||| || ||||||||||| Sbjct 54030 GAAACCACCACGGAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATC 53971 Query 33957 TGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 | ||| || | | |||| |||| ||||| |||||||| || || | |||||| ||| Sbjct 53970 CG-CAAGGGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCG 53912 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATT 34075 || | || ||| |||||| || ||| ||| | | | |||||| | | Sbjct 53911 GAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCAATGGTATCAGAACTCT 53852 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | |||||||| || || || | ||| ||||||||||| ||||| Sbjct 53851 CTACTTCCAATGTTATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 53800 >seq59 Length=1152742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || ||||| || |||||| || ||||||||||| Sbjct 731511 GAAACCACCACGGAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATC 731452 Query 33957 TGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 | ||| || | | |||| |||| ||||| |||||||| || || | |||||| ||| Sbjct 731451 CG-CAAGGGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCG 731393 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATT 34075 || | || ||| |||||| || ||| ||| | | | |||||| | | Sbjct 731392 GAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCAATGGTATCAGAACTCT 731333 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | |||||||| || || || | ||| ||||||||||| ||||| Sbjct 731332 CTACTTCCAATGTTATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 731281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051840869964