Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_009540.1
Length=49902
Score E
Sequences producing significant alignments: (Bits) Value
seq768 181 3e-41
>seq768
Length=200800
Score = 181 bits (200), Expect = 3e-41
Identities = 355/513 (69%), Gaps = 14/513 (3%)
Strand=Plus/Plus
Query 45960 TTTGTATCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCA 46019
||| | || ||||| |||||| ||| | ||||| || |||||||| || | ||| |||
Sbjct 48815 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 48874
Query 46020 TCGCGAGCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 46077
||||| | | ||| | || |||| | || || ||||| || || | | || |
Sbjct 48875 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 48932
Query 46078 CGCCAAACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGC 46137
|||| || | || |||| || || |||| | |||| |||||||||||||
Sbjct 48933 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 48992
Query 46138 TAACAGGATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCT 46197
| || |||||||| || | ||| | |||| | | || |||| | || || |||
Sbjct 48993 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 49052
Query 46198 TGCATGTTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGT 46257
|| | ||| ||||| |||||||||| |||||||||||||||||| || |||||
Sbjct 49053 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 49112
Query 46258 GACGCGAACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCT 46317
|||| | ||| |||||||| | |||||||||||||| || || || | |||||| ||||
Sbjct 49113 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 49172
Query 46318 TGCCGTAAACCTCATTGCGAGC-CTTAAAGCT-GAAATCTGAATCAATCCAAACGTTCAC 46375
|||| || || | |||| | | | | | | ||| | |||||| | ||||||||
Sbjct 49173 TGCCATACACACC--CGCGATCGCGTCACGTTCGAACTTCTCATCAATAAAGACGTTCAC 49230
Query 46376 ATACTCAATGTTGGGATGACTTACGC--GCACTGAA---TG-GTAATCACCATGATCGGC 46429
|||||||||||| ||||| || | || || | || ||||| || ||||||||
Sbjct 49231 ATACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGC 49290
Query 46430 ATCATCATAATTGAAACAGATTACTTTGTGACC 46462
| ||| | ||||| || || || || |||||
Sbjct 49291 CCCGTCAAAGTTGAAGCACATCACCTTATGACC 49323
Score = 181 bits (200), Expect = 3e-41
Identities = 355/513 (69%), Gaps = 14/513 (3%)
Strand=Plus/Plus
Query 45960 TTTGTATCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCA 46019
||| | || ||||| |||||| ||| | ||||| || |||||||| || | ||| |||
Sbjct 99151 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 99210
Query 46020 TCGCGAGCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 46077
||||| | | ||| | || |||| | || || ||||| || || | | || |
Sbjct 99211 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 99268
Query 46078 CGCCAAACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGC 46137
|||| || | || |||| || || |||| | |||| |||||||||||||
Sbjct 99269 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 99328
Query 46138 TAACAGGATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCT 46197
| || |||||||| || | ||| | |||| | | || |||| | || || |||
Sbjct 99329 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 99388
Query 46198 TGCATGTTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGT 46257
|| | ||| ||||| |||||||||| |||||||||||||||||| || |||||
Sbjct 99389 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 99448
Query 46258 GACGCGAACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCT 46317
|||| | ||| |||||||| | |||||||||||||| || || || | |||||| ||||
Sbjct 99449 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 99508
Query 46318 TGCCGTAAACCTCATTGCGAGC-CTTAAAGCT-GAAATCTGAATCAATCCAAACGTTCAC 46375
|||| || || | |||| | | | | | | ||| | |||||| | ||||||||
Sbjct 99509 TGCCATACACACC--CGCGATCGCGTCACGTTCGAACTTCTCATCAATAAAGACGTTCAC 99566
Query 46376 ATACTCAATGTTGGGATGACTTACGC--GCACTGAA---TG-GTAATCACCATGATCGGC 46429
|||||||||||| ||||| || | || || | || ||||| || ||||||||
Sbjct 99567 ATACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGC 99626
Query 46430 ATCATCATAATTGAAACAGATTACTTTGTGACC 46462
| ||| | ||||| || || || || |||||
Sbjct 99627 CCCGTCAAAGTTGAAGCACATCACCTTATGACC 99659
Score = 174 bits (192), Expect = 5e-39
Identities = 350/507 (69%), Gaps = 14/507 (3%)
Strand=Plus/Plus
Query 45966 TCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCATCGCGA 46025
|| ||||| ||||| ||| |||||||| |||||||| || | ||| ||||||||
Sbjct 199822 TCTGGCATGACAAAGTCGTCCGAAGTCCAAAGACAAGTTTTCTTCGGGTAAGCATCGCGC 199881
Query 46026 GCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCGCCAA 46083
| | ||| | || |||| | || ||| |||| || || | | || ||||||
Sbjct 199882 GGCGCAATATACATCGGGAACCAGGGG-TGTGCGTCATTCTCAGGAAGATAG-CCGCCAT 199939
Query 46084 ACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGCTAACAG 46143
|| | || |||| || | || | | ||||| || |||||||||||||| |
Sbjct 199940 ACTCCCAGGGATTGAAAGTGTGGTCAGCCTTTCGCCAGGCTGATGACAGGACGCTAACCG 199999
Query 46144 GATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCTTGCATG 46203
||||||| || | ||| | |||| | | ||| | || | || |||||| | |
Sbjct 200000 GATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGCGGCAATCCGGGCGG 200059
Query 46204 TTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGTGACGCG 46263
| | ||| || || |||||||||||||||||||||| |||||| || |||||| || |
Sbjct 200060 TGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGCTTGCTGGCAAAGTGTCGAG 200119
Query 46264 AACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCTTGCCGT 46323
||| ||||| || | |||||||| || || || || || | ||||| |||||||| |
Sbjct 200120 CACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGAAATCCGGCTTGCCAT 200179
Query 46324 AAACCTCATTGCGAGC-CTTAAAGCT-GAAATCTGAATCAATCCAAACGTTCACATACTC 46381
| || | |||| | | | | | | ||| | |||||| | ||||||||||||||
Sbjct 200180 ACACACC--CGCGATCGCATCACGTTCGAACGTTTCATCAATGAACACGTTCACATACTC 200237
Query 46382 AATGTTGGGATGACTTA--CGCGCACTGAA---TG-GTAATCACCATGATCGGCATCATC 46435
|||||||||||| || || ||| || | || ||||| || |||||||| | ||
Sbjct 200238 AATGTTGGGATGCTCTACCCGGGCATTGTACTTTGCATAATCTCCGTGATCGGCTCCGTC 200297
Query 46436 ATAATTGAAACAGATTACTTTGTGACC 46462
| | ||||| || || ||||| |||||
Sbjct 200298 AAAGTTGAAGCACATCACTTTATGACC 200324
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785
Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222
||||||||||||||||||| ||| |||
Sbjct 3786 AGCAACCAATCAGAGGAATCAGCTATG 3812
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963
Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222
||||||||||||||||||| ||| |||
Sbjct 53964 AGCAACCAATCAGAGGAATCAGCTATG 53990
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415
Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222
||||||||||||||||||| ||| |||
Sbjct 104416 AGCAACCAATCAGAGGAATCAGCTATG 104442
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761
Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222
||||||||||||||||||| ||| |||
Sbjct 154762 AGCAACCAATCAGAGGAATCAGCTATG 154788
Score = 91.5 bits (100), Expect = 5e-14
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 1521 AAATAGCACTTTTTGTTAAAACTCAATTGGGGTGGTTTGACATAATTACCCCATTGAAAC 1580
|||||||| ||||||||||||||| || || ||| ||||||||||||||| ||| |||||
Sbjct 48700 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 48641
Query 1581 GA-AATGAGG-AAAATAAAATG 1600
|| | ||||| |||| ||||||
Sbjct 48640 GAGATTGAGGAAAAACAAAATG 48619
Score = 91.5 bits (100), Expect = 5e-14
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 1521 AAATAGCACTTTTTGTTAAAACTCAATTGGGGTGGTTTGACATAATTACCCCATTGAAAC 1580
|||||||| ||||||||||||||| || || ||| ||||||||||||||| ||| |||||
Sbjct 99036 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 98977
Query 1581 GA-AATGAGG-AAAATAAAATG 1600
|| | ||||| |||| ||||||
Sbjct 98976 GAGATTGAGGAAAAACAAAATG 98955
Score = 87.8 bits (96), Expect = 6e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 1521 AAATAGCACTTTTTGTTAAAACTCAATTGGGGTGGTTTGACATAATTACCCCATTGAAAC 1580
|||||||||||||||||||||||| || || | | |||| |||||||||| ||| |||||
Sbjct 199701 AAATAGCACTTTTTGTTAAAACTCGATCGGTGCGATTTGGCATAATTACCTCATCGAAAC 199642
Query 1581 GA-AATGAGG-AAAATAAAATG 1600
|| | ||||| |||| ||||||
Sbjct 199641 GAGATTGAGGAAAAACAAAATG 199620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159560665476576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |