Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_009540.1 Length=49902 Score E Sequences producing significant alignments: (Bits) Value seq768 181 3e-41 >seq768 Length=200800 Score = 181 bits (200), Expect = 3e-41 Identities = 355/513 (69%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 45960 TTTGTATCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCA 46019 ||| | || ||||| |||||| ||| | ||||| || |||||||| || | ||| ||| Sbjct 48815 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 48874 Query 46020 TCGCGAGCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 46077 ||||| | | ||| | || |||| | || || ||||| || || | | || | Sbjct 48875 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 48932 Query 46078 CGCCAAACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGC 46137 |||| || | || |||| || || |||| | |||| ||||||||||||| Sbjct 48933 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 48992 Query 46138 TAACAGGATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCT 46197 | || |||||||| || | ||| | |||| | | || |||| | || || ||| Sbjct 48993 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 49052 Query 46198 TGCATGTTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGT 46257 || | ||| ||||| |||||||||| |||||||||||||||||| || ||||| Sbjct 49053 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 49112 Query 46258 GACGCGAACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCT 46317 |||| | ||| |||||||| | |||||||||||||| || || || | |||||| |||| Sbjct 49113 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 49172 Query 46318 TGCCGTAAACCTCATTGCGAGC-CTTAAAGCT-GAAATCTGAATCAATCCAAACGTTCAC 46375 |||| || || | |||| | | | | | | ||| | |||||| | |||||||| Sbjct 49173 TGCCATACACACC--CGCGATCGCGTCACGTTCGAACTTCTCATCAATAAAGACGTTCAC 49230 Query 46376 ATACTCAATGTTGGGATGACTTACGC--GCACTGAA---TG-GTAATCACCATGATCGGC 46429 |||||||||||| ||||| || | || || | || ||||| || |||||||| Sbjct 49231 ATACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGC 49290 Query 46430 ATCATCATAATTGAAACAGATTACTTTGTGACC 46462 | ||| | ||||| || || || || ||||| Sbjct 49291 CCCGTCAAAGTTGAAGCACATCACCTTATGACC 49323 Score = 181 bits (200), Expect = 3e-41 Identities = 355/513 (69%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 45960 TTTGTATCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCA 46019 ||| | || ||||| |||||| ||| | ||||| || |||||||| || | ||| ||| Sbjct 99151 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 99210 Query 46020 TCGCGAGCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 46077 ||||| | | ||| | || |||| | || || ||||| || || | | || | Sbjct 99211 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 99268 Query 46078 CGCCAAACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGC 46137 |||| || | || |||| || || |||| | |||| ||||||||||||| Sbjct 99269 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 99328 Query 46138 TAACAGGATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCT 46197 | || |||||||| || | ||| | |||| | | || |||| | || || ||| Sbjct 99329 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 99388 Query 46198 TGCATGTTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGT 46257 || | ||| ||||| |||||||||| |||||||||||||||||| || ||||| Sbjct 99389 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 99448 Query 46258 GACGCGAACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCT 46317 |||| | ||| |||||||| | |||||||||||||| || || || | |||||| |||| Sbjct 99449 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 99508 Query 46318 TGCCGTAAACCTCATTGCGAGC-CTTAAAGCT-GAAATCTGAATCAATCCAAACGTTCAC 46375 |||| || || | |||| | | | | | | ||| | |||||| | |||||||| Sbjct 99509 TGCCATACACACC--CGCGATCGCGTCACGTTCGAACTTCTCATCAATAAAGACGTTCAC 99566 Query 46376 ATACTCAATGTTGGGATGACTTACGC--GCACTGAA---TG-GTAATCACCATGATCGGC 46429 |||||||||||| ||||| || | || || | || ||||| || |||||||| Sbjct 99567 ATACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGC 99626 Query 46430 ATCATCATAATTGAAACAGATTACTTTGTGACC 46462 | ||| | ||||| || || || || ||||| Sbjct 99627 CCCGTCAAAGTTGAAGCACATCACCTTATGACC 99659 Score = 174 bits (192), Expect = 5e-39 Identities = 350/507 (69%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 45966 TCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCATCGCGA 46025 || ||||| ||||| ||| |||||||| |||||||| || | ||| |||||||| Sbjct 199822 TCTGGCATGACAAAGTCGTCCGAAGTCCAAAGACAAGTTTTCTTCGGGTAAGCATCGCGC 199881 Query 46026 GCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCGCCAA 46083 | | ||| | || |||| | || ||| |||| || || | | || |||||| Sbjct 199882 GGCGCAATATACATCGGGAACCAGGGG-TGTGCGTCATTCTCAGGAAGATAG-CCGCCAT 199939 Query 46084 ACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGCTAACAG 46143 || | || |||| || | || | | ||||| || |||||||||||||| | Sbjct 199940 ACTCCCAGGGATTGAAAGTGTGGTCAGCCTTTCGCCAGGCTGATGACAGGACGCTAACCG 199999 Query 46144 GATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAATCTTGCATG 46203 ||||||| || | ||| | |||| | | ||| | || | || |||||| | | Sbjct 200000 GATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGCGGCAATCCGGGCGG 200059 Query 46204 TTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGTGACGCG 46263 | | ||| || || |||||||||||||||||||||| |||||| || |||||| || | Sbjct 200060 TGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGCTTGCTGGCAAAGTGTCGAG 200119 Query 46264 AACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCTTGCCGT 46323 ||| ||||| || | |||||||| || || || || || | ||||| |||||||| | Sbjct 200120 CACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGAAATCCGGCTTGCCAT 200179 Query 46324 AAACCTCATTGCGAGC-CTTAAAGCT-GAAATCTGAATCAATCCAAACGTTCACATACTC 46381 | || | |||| | | | | | | ||| | |||||| | |||||||||||||| Sbjct 200180 ACACACC--CGCGATCGCATCACGTTCGAACGTTTCATCAATGAACACGTTCACATACTC 200237 Query 46382 AATGTTGGGATGACTTA--CGCGCACTGAA---TG-GTAATCACCATGATCGGCATCATC 46435 |||||||||||| || || ||| || | || ||||| || |||||||| | || Sbjct 200238 AATGTTGGGATGCTCTACCCGGGCATTGTACTTTGCATAATCTCCGTGATCGGCTCCGTC 200297 Query 46436 ATAATTGAAACAGATTACTTTGTGACC 46462 | | ||||| || || ||||| ||||| Sbjct 200298 AAAGTTGAAGCACATCACTTTATGACC 200324 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195 |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785 Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222 ||||||||||||||||||| ||| ||| Sbjct 3786 AGCAACCAATCAGAGGAATCAGCTATG 3812 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195 |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963 Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222 ||||||||||||||||||| ||| ||| Sbjct 53964 AGCAACCAATCAGAGGAATCAGCTATG 53990 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195 |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415 Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222 ||||||||||||||||||| ||| ||| Sbjct 104416 AGCAACCAATCAGAGGAATCAGCTATG 104442 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5136 ATAGCACGAATTGCTAAAAATTACGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 5195 |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761 Query 5196 AGCAACCAATCAGAGGAATAAGCGATG 5222 ||||||||||||||||||| ||| ||| Sbjct 154762 AGCAACCAATCAGAGGAATCAGCTATG 154788 Score = 91.5 bits (100), Expect = 5e-14 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 1521 AAATAGCACTTTTTGTTAAAACTCAATTGGGGTGGTTTGACATAATTACCCCATTGAAAC 1580 |||||||| ||||||||||||||| || || ||| ||||||||||||||| ||| ||||| Sbjct 48700 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 48641 Query 1581 GA-AATGAGG-AAAATAAAATG 1600 || | ||||| |||| |||||| Sbjct 48640 GAGATTGAGGAAAAACAAAATG 48619 Score = 91.5 bits (100), Expect = 5e-14 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 1521 AAATAGCACTTTTTGTTAAAACTCAATTGGGGTGGTTTGACATAATTACCCCATTGAAAC 1580 |||||||| ||||||||||||||| || || ||| ||||||||||||||| ||| ||||| Sbjct 99036 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 98977 Query 1581 GA-AATGAGG-AAAATAAAATG 1600 || | ||||| |||| |||||| Sbjct 98976 GAGATTGAGGAAAAACAAAATG 98955 Score = 87.8 bits (96), Expect = 6e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 1521 AAATAGCACTTTTTGTTAAAACTCAATTGGGGTGGTTTGACATAATTACCCCATTGAAAC 1580 |||||||||||||||||||||||| || || | | |||| |||||||||| ||| ||||| Sbjct 199701 AAATAGCACTTTTTGTTAAAACTCGATCGGTGCGATTTGGCATAATTACCTCATCGAAAC 199642 Query 1581 GA-AATGAGG-AAAATAAAATG 1600 || | ||||| |||| |||||| Sbjct 199641 GAGATTGAGGAAAAACAAAATG 199620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159560665476576