Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1330 136 5e-27 seq801 136 5e-27 seq202 123 3e-23 seq122 96.9 4e-15 seq340 86.0 7e-12 >seq1330 Length=73179 Score = 136 bits (150), Expect = 5e-27 Identities = 379/570 (66%), Gaps = 21/570 (4%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 27047 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 26988 Query 125819 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 |||| || ||||||| ||| | || |||| | | ||||| | || | Sbjct 26987 CAATCGAACGGGTTCTGGACATTG---TACATCTTGTCGT-ATCCCAACGAGCCC-AGCA 26933 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | ||||||| ||| |||| |||||| |||| || |||||| || | || Sbjct 26932 GCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCG 26873 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| | Sbjct 26872 CACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCG 26813 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAA 126050 | || ||| | | | | || | || | |||| | | |||| | | Sbjct 26812 ACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CGA 26756 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | |||||||| || ||||| || || || ||||| |||||| |||| Sbjct 26755 AGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCA 26696 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | ||| ||||| || | ||| || ||||| || || ||||||||||| || |||| Sbjct 26695 TTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCT 26636 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACT 126230 |||| || || || || | || ||||| || || || | || ||| | ||| Sbjct 26635 CCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CTCG--GAGCCGTCGATCCATC 26579 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 26578 TCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGC 26519 Query 126291 CCTTCTTTTCTGATGGA-TCTTTGATGTAC 126319 | ||| || | ||| || ||||||||| Sbjct 26518 GGTGCTTCTC-GTCGGAGTCCTTGATGTAC 26490 Score = 136 bits (150), Expect = 5e-27 Identities = 379/570 (66%), Gaps = 21/570 (4%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 46133 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 46192 Query 125819 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 |||| || ||||||| ||| | || |||| | | ||||| | || | Sbjct 46193 CAATCGAACGGGTTCTGGACATTG---TACATCTTGTCGT-ATCCCAACGAGCCC-AGCA 46247 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | ||||||| ||| |||| |||||| |||| || |||||| || | || Sbjct 46248 GCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCG 46307 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| | Sbjct 46308 CACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCG 46367 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAA 126050 | || ||| | | | | || | || | |||| | | |||| | | Sbjct 46368 ACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CGA 46424 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | |||||||| || ||||| || || || ||||| |||||| |||| Sbjct 46425 AGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCA 46484 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | ||| ||||| || | ||| || ||||| || || ||||||||||| || |||| Sbjct 46485 TTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCT 46544 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACT 126230 |||| || || || || | || ||||| || || || | || ||| | ||| Sbjct 46545 CCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CTCG--GAGCCGTCGATCCATC 46601 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 46602 TCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGC 46661 Query 126291 CCTTCTTTTCTGATGGA-TCTTTGATGTAC 126319 | ||| || | ||| || ||||||||| Sbjct 46662 GGTGCTTCTC-GTCGGAGTCCTTGATGTAC 46690 >seq801 Length=188201 Score = 136 bits (150), Expect = 5e-27 Identities = 379/570 (66%), Gaps = 21/570 (4%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 12048 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 11989 Query 125819 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 |||| || ||||||| ||| | || |||| | | ||||| | || | Sbjct 11988 CAATCGAACGGGTTCTGGACATTG---TACATCTTGTCGT-ATCCCAACGAGCCC-AGCA 11934 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | ||||||| ||| |||| |||||| |||| || |||||| || | || Sbjct 11933 GCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCG 11874 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| | Sbjct 11873 CACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCG 11814 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAA 126050 | || ||| | | | | || | || | |||| | | |||| | | Sbjct 11813 ACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CGA 11757 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | |||||||| || ||||| || || || ||||| |||||| |||| Sbjct 11756 AGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCA 11697 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | ||| ||||| || | ||| || ||||| || || ||||||||||| || |||| Sbjct 11696 TTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCT 11637 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACT 126230 |||| || || || || | || ||||| || || || | || ||| | ||| Sbjct 11636 CCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CTCG--GAGCCGTCGATCCATC 11580 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 11579 TCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGC 11520 Query 126291 CCTTCTTTTCTGATGGA-TCTTTGATGTAC 126319 | ||| || | ||| || ||||||||| Sbjct 11519 GGTGCTTCTC-GTCGGAGTCCTTGATGTAC 11491 >seq202 Length=624202 Score = 123 bits (136), Expect = 3e-23 Identities = 379/569 (67%), Gaps = 19/569 (3%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 31090 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 31149 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC--ACCCCAATCTGTTTGAGGAGAC 125876 | || || ||||||| || | || ||| | | ||||| | || || | Sbjct 31150 CAGTCGAAGGGGTTCTGGACATTGTACATC-TTGCCGTATCCCAACGAGCCC-AGCAGCC 31207 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| ||| |||| |||||| |||| || |||||| || | || || Sbjct 31208 GATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCAC 31267 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG-CG 125995 | || |||||||| | | |||| | |||| || ||||| || | ||| ||||| | | Sbjct 31268 ACGGCAGCGCGTCGCACACGAACTCTCTCTCGATCTCCACCGCGTTCCGTACGATCGACA 31327 Query 125996 TGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAA 126051 | | | ||| | | ||| | | || | || | |||| | | |||| | || Sbjct 31328 TCACCCGA-TCCTCGCTCAGCT-TCTTCCTCA--GCAGTGAATACAGCAAACACG-CGAA 31382 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| | |||||||| || ||||| || || || ||||| |||||| ||||| Sbjct 31383 GTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCAT 31442 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | ||| ||||| || | ||| || ||||| || || ||||||||||| || ||||| Sbjct 31443 TAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTC 31502 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 ||| || || || || | || ||||| || || || | || ||| | ||| | Sbjct 31503 CACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGA-CTCG--GAGCCGTCGATCCATCT 31559 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 126291 || |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 31560 CAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCGTGGAAGAGGCG 31619 Query 126292 CTTCTTTTCTGATGGA-TCTTTGATGTAC 126319 | ||| || | ||| || ||||||||| Sbjct 31620 GTGCTTCTC-GTCGGAGTCCTTGATGTAC 31647 >seq122 Length=845292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 195/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| || || || | || | ||| |||||| ||||| | ||| ||||| || Sbjct 635900 TCAAACCGGCCAGGCCTCAGTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCA 635841 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 | || | ||| || || | | ||||| |||||||| || ||||| || ||||| | | Sbjct 635840 ACCACGATGATACCAGTGTTGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 635781 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCGACG 10966 |||||||| | |||||| ||| | |||| || | | | |||| || || Sbjct 635780 GTTTGTTCCCTTTCATCGTTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCAACA 635724 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAGA 11024 |||||||||||||| | || || || || ||| ||| || ||| |||| ||| | Sbjct 635723 GCGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAA 635666 Query 11025 TATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| || |||| ||||| ||||| ||||||||||| ||||| Sbjct 635665 GATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 635620 >seq340 Length=460696 Score = 86.0 bits (94), Expect = 7e-12 Identities = 175/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| ||||| | ||| ||||| || | || | || || || | | ||||| Sbjct 356508 GTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTTCAAA 356567 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || ||||| || ||||| | ||||||||| | |||||| ||| | Sbjct 356568 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCC--- 356624 Query 10939 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || | | | |||| || || |||||||||||||| | || || || || Sbjct 356625 ACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCA 356684 Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 ||| ||| || ||| |||| ||| | ||| || |||| ||||| || || Sbjct 356685 AGGTGCATTCTCCTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCA 356742 Query 11054 ACAAACATTTCCACAAA 11070 ||||||||||| ||||| Sbjct 356743 ACAAACATTTCAACAAA 356759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337307180560