Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq15 93.3 3e-14
seq687 91.5 1e-13
seq59 91.5 1e-13
seq1 89.7 4e-13
seq819 87.8 1e-12
>seq15
Length=1624393
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | ||| |||||||| ||||| || ||||||||||| || | | | || ||
Sbjct 1057174 AACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCCGCAAGGGTACGACCATCCTC 1057233
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|| ||||| |||||| | ||||| | ||| ||||| ||| || || ||||||||
Sbjct 1057234 TAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTG 1057293
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| || ||| ||| | || ||||| || | || || || | || || || ||
Sbjct 1057294 AATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCGAGAGTGATCGTCTT 1057353
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||||||| || || ||||| || ||||||
Sbjct 1057354 CCCTGTCAGTGTCTTCACAAATATCTGCATA 1057384
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||||| || | | || || || | ||||| || ||||| |||||||||||
Sbjct 1075059 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 1075118
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| | || |||| || ||||| || |||||| | ||||| | ||| | ||| ||
Sbjct 1075119 CCAATGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTAGTCTGGTG 1075178
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||| ||||| || || ||| || ||| | || || ||||| | || |
Sbjct 1075179 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 1075238
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | ||||| || || || || || ||||| |||||||| ||||||
Sbjct 1075239 CCTCGAGAGTAATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 1075288
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | || || | ||| || || | || || || ||||| |||||||||||
Sbjct 1057613 CCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 1057672
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC-GTTTGG 15068
||| | || | || || ||||| || ||||| | || || | ||| ||||| | ||
Sbjct 1057673 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGGGGG 1057732
Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||| ||||| || || ||||| || || | || || ||||| | |||| |
Sbjct 1057733 GATTCCCTCCTTATCTTGGATCTTTGC-CTTGACGTTATCGATCGTATCAGAACTTTCGA 1057791
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || || ||||| || || || ||||| ||||| ||||| || ||||||
Sbjct 1057792 CCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCATA 1057841
>seq687
Length=229775
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || || || || || || ||||| |||||||| ||
Sbjct 53798 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 53739
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | || | || || | || ||||| || | ||||| | |||||||| |||
Sbjct 53738 AGTGTCCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGGGGGA 53679
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| |||||| || ||| | || || ||||| | |||| ||
Sbjct 53678 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACT 53619
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | |||||||||||| || |||| || || ||||| |||||||||
Sbjct 53618 TCCAGGGTAATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCATA 53571
>seq59
Length=1152742
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || || || || || || ||||| |||||||| ||
Sbjct 731279 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 731220
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | || | || || | || ||||| || | ||||| | |||||||| |||
Sbjct 731219 AGTGTCCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGGGGGA 731160
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| |||||| || ||| | || || ||||| | |||| ||
Sbjct 731159 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACT 731100
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | |||||||||||| || |||| || || ||||| |||||||||
Sbjct 731099 TCCAGGGTAATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCATA 731052
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || |||||||| ||| ||| | | |||| || | ||
Sbjct 893163 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 893222
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||| || |||||| | || ||||| ||||| ||||||||||| || |||
Sbjct 893223 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 893282
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || ||| |||| || || | ||| ||||| || || |||
Sbjct 893283 GCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGTC 893342
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| || |||||
Sbjct 893343 AGGGTTTTCACAAAGATCTGCAT 893365
>seq1
Length=4167794
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| |||| | | || || || ||||| || || || || |||||||||||
Sbjct 1162831 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTG 1162890
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| ||| ||||||| | || || || ||| | || | |||||| ||||| |
Sbjct 1162891 CGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGG 1162950
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || ||||||||||| || ||| ||| || | || || || ||| | || |
Sbjct 1162951 GGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAAGACTCGA 1163010
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| ||||| || || || || ||||| || || ||||||||
Sbjct 1163011 CCTCGAGGGTGATGGTCTTTCCAGTAAGGGTTTTCACGAAGATTTGCAT 1163059
>seq819
Length=180711
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || |||||||| ||| ||| | | |||| || | ||
Sbjct 10162 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 10103
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||| || |||||| | || ||||| ||||| ||||||||||| || |||
Sbjct 10102 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 10043
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || ||| |||| || || | ||| ||||| || || |||
Sbjct 10042 GCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGTC 9983
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| || |||||
Sbjct 9982 AGGGTTTTCACAAAGATCTGCAT 9960
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || |||||||| ||| ||| | | |||| || | ||
Sbjct 178092 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 178151
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||| || |||||| | || ||||| ||||| ||||||||||| || |||
Sbjct 178152 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 178211
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || ||| |||| || || | ||| ||||| || || |||
Sbjct 178212 GCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGTC 178271
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| || |||||
Sbjct 178272 AGGGTTTTCACAAAGATCTGCAT 178294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357382495829870
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