Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 3e-14 seq687 91.5 1e-13 seq59 91.5 1e-13 seq1 89.7 4e-13 seq819 87.8 1e-12 >seq15 Length=1624393 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| |||||||| ||||| || ||||||||||| || | | | || || Sbjct 1057174 AACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCCGCAAGGGTACGACCATCCTC 1057233 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||| |||||| | ||||| | ||| ||||| ||| || || |||||||| Sbjct 1057234 TAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTG 1057293 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || ||||| || | || || || | || || || || Sbjct 1057294 AATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCGAGAGTGATCGTCTT 1057353 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| || || ||||| || |||||| Sbjct 1057354 CCCTGTCAGTGTCTTCACAAATATCTGCATA 1057384 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || || || | ||||| || ||||| ||||||||||| Sbjct 1075059 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 1075118 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | || |||| || ||||| || |||||| | ||||| | ||| | ||| || Sbjct 1075119 CCAATGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTAGTCTGGTG 1075178 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| ||||| || || ||| || ||| | || || ||||| | || | Sbjct 1075179 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 1075238 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| || || || || || ||||| |||||||| |||||| Sbjct 1075239 CCTCGAGAGTAATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 1075288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | || || | ||| || || | || || || ||||| ||||||||||| Sbjct 1057613 CCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 1057672 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC-GTTTGG 15068 ||| | || | || || ||||| || ||||| | || || | ||| ||||| | || Sbjct 1057673 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGGGGG 1057732 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||| ||||| || || ||||| || || | || || ||||| | |||| | Sbjct 1057733 GATTCCCTCCTTATCTTGGATCTTTGC-CTTGACGTTATCGATCGTATCAGAACTTTCGA 1057791 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||| || || || ||||| ||||| ||||| || |||||| Sbjct 1057792 CCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCATA 1057841 >seq687 Length=229775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || || ||||| |||||||| || Sbjct 53798 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 53739 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | || || | || ||||| || | ||||| | |||||||| ||| Sbjct 53738 AGTGTCCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGGGGGA 53679 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| || ||| | || || ||||| | |||| || Sbjct 53678 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACT 53619 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||||||| || |||| || || ||||| ||||||||| Sbjct 53618 TCCAGGGTAATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCATA 53571 >seq59 Length=1152742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || || ||||| |||||||| || Sbjct 731279 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 731220 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | || || | || ||||| || | ||||| | |||||||| ||| Sbjct 731219 AGTGTCCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGGGGGA 731160 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| || ||| | || || ||||| | |||| || Sbjct 731159 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTCAACT 731100 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||||||| || |||| || || ||||| ||||||||| Sbjct 731099 TCCAGGGTAATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCATA 731052 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| | | |||| || | || Sbjct 893163 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 893222 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 893223 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 893282 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||| |||| || || | ||| ||||| || || ||| Sbjct 893283 GCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGTC 893342 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || ||||| Sbjct 893343 AGGGTTTTCACAAAGATCTGCAT 893365 >seq1 Length=4167794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || || ||||| || || || || ||||||||||| Sbjct 1162831 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTG 1162890 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| ||||||| | || || || ||| | || | |||||| ||||| | Sbjct 1162891 CGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGG 1162950 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| ||| || | || || || ||| | || | Sbjct 1162951 GGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAAGACTCGA 1163010 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || || ||||| || || |||||||| Sbjct 1163011 CCTCGAGGGTGATGGTCTTTCCAGTAAGGGTTTTCACGAAGATTTGCAT 1163059 >seq819 Length=180711 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| | | |||| || | || Sbjct 10162 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 10103 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 10102 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 10043 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||| |||| || || | ||| ||||| || || ||| Sbjct 10042 GCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGTC 9983 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || ||||| Sbjct 9982 AGGGTTTTCACAAAGATCTGCAT 9960 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| | | |||| || | || Sbjct 178092 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 178151 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 178152 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 178211 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||| |||| || || | ||| ||||| || || ||| Sbjct 178212 GCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGTC 178271 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || ||||| Sbjct 178272 AGGGTTTTCACAAAGATCTGCAT 178294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382495829870