Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_012223.2 Length=44899 Score E Sequences producing significant alignments: (Bits) Value seq768 113 1e-20 >seq768 Length=200800 Score = 113 bits (124), Expect = 1e-20 Identities = 250/368 (68%), Gaps = 8/368 (2%) Strand=Plus/Plus Query 27567 TACCGGCTTTTTCTCTGGTATACGGAAGCCGTTGCCG--GTCCATAAGCAGGTCAGCTTC 27624 ||| ||||| | ||||| || ||| ||| ||| ||||| | || || |||| Sbjct 199809 TACAGGCTTCCTTTCTGGCATGACAAAGTCGT--CCGAAGTCCAAAGACAAGTTTTCTTC 199866 Query 27625 GGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGAGCGGGTGCACGTCATCCTCCGG 27683 || || | |||||| |||| || || |||||| ||||| |||||| ||| || Sbjct 199867 GGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACCAGGGGTGTGCGTCATTCTCAGG 199925 Query 27684 CAAATAGCCGCCATACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCATTGAGTGGA 27743 | |||||||||||||||||| || | || | |||||| | ||| ||||| | || Sbjct 199926 AAGATAGCCGCCATACTCCCAGGGATTGAAAGTGTGGTCAGCCTTTCGCCAGGCTGATGA 199985 Query 27744 GAGCACGCTGCGCGGATTCTCAATCATATATGGCACTTCAAAGAAATCACCCAGGTAAGC 27803 || ||||| |||||||||||| || || | ||| | | | |||||| | || || Sbjct 199986 CAGGACGCTAACCGGATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGC 200045 Query 27804 GGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGGCAGGGTCGCGGGCGCGTTTGCG 27863 ||| ||| |||||| || || || |||||| || || || || |||| Sbjct 200046 GGCAATCCGGGCGGTGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGCTTGC- 200104 Query 27864 CGGGAAAG-CTGGCGCACCGCTCACCGCCAGATCCGTACACGGCGGGAATGCGTATATGA 27922 || |||| | | ||||| || || ||||| || || ||||||||||| || |||| Sbjct 200105 TGGCAAAGTGTCGAGCACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGA 200164 Query 27923 TATCCGGC 27930 ||||||| Sbjct 200165 AATCCGGC 200172 Score = 93.3 bits (102), Expect = 1e-14 Identities = 223/331 (67%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 27603 GGTCCATAAGCAGGTCAGCTTCGGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGA 27661 |||||| | || || |||||| || | |||||| |||| || || |||||| Sbjct 48844 GGTCCACAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACC 48902 Query 27662 GCGGGTGCACGTCATCCTCCGGCAAATAGCCGCCATACTCCCACGGGTCAAACGAGTGGT 27721 |||||| |||||||||| || | ||||||||| |||||||| || | || ||||| | Sbjct 48903 AGGGGTGCGCGTCATCCTCAGGAAGATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGAT 48962 Query 27722 CCGGCTTACGCCATTGAGTGGAGAGCACGCTGCGCGGATTCTCAATCATATATGGCACTT 27781 || || | ||| || || || ||||| |||||||||||| || || | ||| Sbjct 48963 TTGGTTTTCTCCACGCAGACGACAGGACGCTCACCGGATTCTCAATGATGTAAGTCACAC 49022 Query 27782 CAAAGAAATCACCCAGGTAAGCGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGG 27841 ||| ||||| | || || || ||| |||||| || ||||| |||||| Sbjct 49023 CAAGCTCCTCACCAATGTTCGCAGCTATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATA 49082 Query 27842 CAGGGTCGCGGGCGCGTTTGCGCGGGAAAGCTG--GCGCACCGCTCACCGCCAGATCCGT 27899 || || || | || || | || |||| || | ||||| || || ||||| || || Sbjct 49083 ACGGATCACGTTCACGCTTAC-TGGCAAAG-TGACGAGCACCACTAACAGCCAGGTCAGT 49140 Query 27900 ACACGGCGGGAATGCGTATATGATATCCGGC 27930 || || ||||| || || | ||||||| Sbjct 49141 GCATGGAGGGAAAGCCATAATAAAATCCGGC 49171 Score = 93.3 bits (102), Expect = 1e-14 Identities = 223/331 (67%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 27603 GGTCCATAAGCAGGTCAGCTTCGGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGA 27661 |||||| | || || |||||| || | |||||| |||| || || |||||| Sbjct 99180 GGTCCACAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACC 99238 Query 27662 GCGGGTGCACGTCATCCTCCGGCAAATAGCCGCCATACTCCCACGGGTCAAACGAGTGGT 27721 |||||| |||||||||| || | ||||||||| |||||||| || | || ||||| | Sbjct 99239 AGGGGTGCGCGTCATCCTCAGGAAGATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGAT 99298 Query 27722 CCGGCTTACGCCATTGAGTGGAGAGCACGCTGCGCGGATTCTCAATCATATATGGCACTT 27781 || || | ||| || || || ||||| |||||||||||| || || | ||| Sbjct 99299 TTGGTTTTCTCCACGCAGACGACAGGACGCTCACCGGATTCTCAATGATGTAAGTCACAC 99358 Query 27782 CAAAGAAATCACCCAGGTAAGCGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGG 27841 ||| ||||| | || || || ||| |||||| || ||||| |||||| Sbjct 99359 CAAGCTCCTCACCAATGTTCGCAGCTATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATA 99418 Query 27842 CAGGGTCGCGGGCGCGTTTGCGCGGGAAAGCTG--GCGCACCGCTCACCGCCAGATCCGT 27899 || || || | || || | || |||| || | ||||| || || ||||| || || Sbjct 99419 ACGGATCACGTTCACGCTTAC-TGGCAAAG-TGACGAGCACCACTAACAGCCAGGTCAGT 99476 Query 27900 ACACGGCGGGAATGCGTATATGATATCCGGC 27930 || || ||||| || || | ||||||| Sbjct 99477 GCATGGAGGGAAAGCCATAATAAAATCCGGC 99507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143551480305324