Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_012223.2
Length=44899
Score E
Sequences producing significant alignments: (Bits) Value
seq768 113 1e-20
>seq768
Length=200800
Score = 113 bits (124), Expect = 1e-20
Identities = 250/368 (68%), Gaps = 8/368 (2%)
Strand=Plus/Plus
Query 27567 TACCGGCTTTTTCTCTGGTATACGGAAGCCGTTGCCG--GTCCATAAGCAGGTCAGCTTC 27624
||| ||||| | ||||| || ||| ||| ||| ||||| | || || ||||
Sbjct 199809 TACAGGCTTCCTTTCTGGCATGACAAAGTCGT--CCGAAGTCCAAAGACAAGTTTTCTTC 199866
Query 27625 GGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGAGCGGGTGCACGTCATCCTCCGG 27683
|| || | |||||| |||| || || |||||| ||||| |||||| ||| ||
Sbjct 199867 GGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACCAGGGGTGTGCGTCATTCTCAGG 199925
Query 27684 CAAATAGCCGCCATACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCATTGAGTGGA 27743
| |||||||||||||||||| || | || | |||||| | ||| ||||| | ||
Sbjct 199926 AAGATAGCCGCCATACTCCCAGGGATTGAAAGTGTGGTCAGCCTTTCGCCAGGCTGATGA 199985
Query 27744 GAGCACGCTGCGCGGATTCTCAATCATATATGGCACTTCAAAGAAATCACCCAGGTAAGC 27803
|| ||||| |||||||||||| || || | ||| | | | |||||| | || ||
Sbjct 199986 CAGGACGCTAACCGGATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGC 200045
Query 27804 GGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGGCAGGGTCGCGGGCGCGTTTGCG 27863
||| ||| |||||| || || || |||||| || || || || ||||
Sbjct 200046 GGCAATCCGGGCGGTGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGCTTGC- 200104
Query 27864 CGGGAAAG-CTGGCGCACCGCTCACCGCCAGATCCGTACACGGCGGGAATGCGTATATGA 27922
|| |||| | | ||||| || || ||||| || || ||||||||||| || ||||
Sbjct 200105 TGGCAAAGTGTCGAGCACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGA 200164
Query 27923 TATCCGGC 27930
|||||||
Sbjct 200165 AATCCGGC 200172
Score = 93.3 bits (102), Expect = 1e-14
Identities = 223/331 (67%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 27603 GGTCCATAAGCAGGTCAGCTTCGGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGA 27661
|||||| | || || |||||| || | |||||| |||| || || ||||||
Sbjct 48844 GGTCCACAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACC 48902
Query 27662 GCGGGTGCACGTCATCCTCCGGCAAATAGCCGCCATACTCCCACGGGTCAAACGAGTGGT 27721
|||||| |||||||||| || | ||||||||| |||||||| || | || ||||| |
Sbjct 48903 AGGGGTGCGCGTCATCCTCAGGAAGATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGAT 48962
Query 27722 CCGGCTTACGCCATTGAGTGGAGAGCACGCTGCGCGGATTCTCAATCATATATGGCACTT 27781
|| || | ||| || || || ||||| |||||||||||| || || | |||
Sbjct 48963 TTGGTTTTCTCCACGCAGACGACAGGACGCTCACCGGATTCTCAATGATGTAAGTCACAC 49022
Query 27782 CAAAGAAATCACCCAGGTAAGCGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGG 27841
||| ||||| | || || || ||| |||||| || ||||| ||||||
Sbjct 49023 CAAGCTCCTCACCAATGTTCGCAGCTATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATA 49082
Query 27842 CAGGGTCGCGGGCGCGTTTGCGCGGGAAAGCTG--GCGCACCGCTCACCGCCAGATCCGT 27899
|| || || | || || | || |||| || | ||||| || || ||||| || ||
Sbjct 49083 ACGGATCACGTTCACGCTTAC-TGGCAAAG-TGACGAGCACCACTAACAGCCAGGTCAGT 49140
Query 27900 ACACGGCGGGAATGCGTATATGATATCCGGC 27930
|| || ||||| || || | |||||||
Sbjct 49141 GCATGGAGGGAAAGCCATAATAAAATCCGGC 49171
Score = 93.3 bits (102), Expect = 1e-14
Identities = 223/331 (67%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 27603 GGTCCATAAGCAGGTCAGCTTCGGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGA 27661
|||||| | || || |||||| || | |||||| |||| || || ||||||
Sbjct 99180 GGTCCACAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACC 99238
Query 27662 GCGGGTGCACGTCATCCTCCGGCAAATAGCCGCCATACTCCCACGGGTCAAACGAGTGGT 27721
|||||| |||||||||| || | ||||||||| |||||||| || | || ||||| |
Sbjct 99239 AGGGGTGCGCGTCATCCTCAGGAAGATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGAT 99298
Query 27722 CCGGCTTACGCCATTGAGTGGAGAGCACGCTGCGCGGATTCTCAATCATATATGGCACTT 27781
|| || | ||| || || || ||||| |||||||||||| || || | |||
Sbjct 99299 TTGGTTTTCTCCACGCAGACGACAGGACGCTCACCGGATTCTCAATGATGTAAGTCACAC 99358
Query 27782 CAAAGAAATCACCCAGGTAAGCGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGG 27841
||| ||||| | || || || ||| |||||| || ||||| ||||||
Sbjct 99359 CAAGCTCCTCACCAATGTTCGCAGCTATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATA 99418
Query 27842 CAGGGTCGCGGGCGCGTTTGCGCGGGAAAGCTG--GCGCACCGCTCACCGCCAGATCCGT 27899
|| || || | || || | || |||| || | ||||| || || ||||| || ||
Sbjct 99419 ACGGATCACGTTCACGCTTAC-TGGCAAAG-TGACGAGCACCACTAACAGCCAGGTCAGT 99476
Query 27900 ACACGGCGGGAATGCGTATATGATATCCGGC 27930
|| || ||||| || || | |||||||
Sbjct 99477 GCATGGAGGGAAAGCCATAATAAAATCCGGC 99507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143551480305324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |