Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1330 132 6e-26 seq801 132 6e-26 seq202 120 4e-22 seq122 87.8 2e-12 seq8 82.4 9e-11 >seq1330 Length=73179 Score = 132 bits (146), Expect = 6e-26 Identities = 377/569 (66%), Gaps = 19/569 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||| |||||||| |||||||| |||||||| | |||||||| |||||| Sbjct 27047 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 26988 Query 127292 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 127346 |||| || ||||||| ||| | || |||| | | ||||| | || | Sbjct 26987 CAATCGAACGGGTTCTGGACATTG---TACATCTTGTCGT-ATCCCAACGAGCCC-AGCA 26933 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 | ||||||| ||| |||| |||||| |||| || |||||| || | || Sbjct 26932 GCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCG 26873 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 ||| || |||||||| | | |||| || |||| || ||||| || | ||||||||| | Sbjct 26872 CACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCG 26813 Query 127467 CGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA-CA-GCAAA 127524 | || ||| | | | | || | | | |||| | | | || || || Sbjct 26812 ACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACGCGAA 26755 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | |||||||| || ||||| || || || ||||| ||| || ||||| Sbjct 26754 GTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCAT 26695 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | ||| ||||| || | ||| || ||||| || || || |||||||| |||||||| Sbjct 26694 TAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTC 26635 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTT 127704 ||| || || || || | | ||||| || || || ||| || | ||| | Sbjct 26634 CACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCT 26578 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 || |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 26577 CAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCG 26518 Query 127765 CTTCTTTTCTGATGGA-TCTTTGATGTAC 127792 | ||| || | ||| || ||||||||| Sbjct 26517 GTGCTTCTC-GTCGGAGTCCTTGATGTAC 26490 Score = 132 bits (146), Expect = 6e-26 Identities = 377/569 (66%), Gaps = 19/569 (3%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||| |||||||| |||||||| |||||||| | |||||||| |||||| Sbjct 46133 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 46192 Query 127292 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 127346 |||| || ||||||| ||| | || |||| | | ||||| | || | Sbjct 46193 CAATCGAACGGGTTCTGGACATTG---TACATCTTGTCGT-ATCCCAACGAGCCC-AGCA 46247 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 | ||||||| ||| |||| |||||| |||| || |||||| || | || Sbjct 46248 GCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCG 46307 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 ||| || |||||||| | | |||| || |||| || ||||| || | ||||||||| | Sbjct 46308 CACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCG 46367 Query 127467 CGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA-CA-GCAAA 127524 | || ||| | | | | || | | | |||| | | | || || || Sbjct 46368 ACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACGCGAA 46425 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | |||||||| || ||||| || || || ||||| ||| || ||||| Sbjct 46426 GTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCAT 46485 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | ||| ||||| || | ||| || ||||| || || || |||||||| |||||||| Sbjct 46486 TAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTC 46545 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTT 127704 ||| || || || || | | ||||| || || || ||| || | ||| | Sbjct 46546 CACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCT 46602 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 || |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 46603 CAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCG 46662 Query 127765 CTTCTTTTCTGATGGA-TCTTTGATGTAC 127792 | ||| || | ||| || ||||||||| Sbjct 46663 GTGCTTCTC-GTCGGAGTCCTTGATGTAC 46690 >seq801 Length=188201 Score = 132 bits (146), Expect = 6e-26 Identities = 377/569 (66%), Gaps = 19/569 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||| |||||||| |||||||| |||||||| | |||||||| |||||| Sbjct 12048 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 11989 Query 127292 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 127346 |||| || ||||||| ||| | || |||| | | ||||| | || | Sbjct 11988 CAATCGAACGGGTTCTGGACATTG---TACATCTTGTCGT-ATCCCAACGAGCCC-AGCA 11934 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 | ||||||| ||| |||| |||||| |||| || |||||| || | || Sbjct 11933 GCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCG 11874 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 ||| || |||||||| | | |||| || |||| || ||||| || | ||||||||| | Sbjct 11873 CACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCG 11814 Query 127467 CGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA-CA-GCAAA 127524 | || ||| | | | | || | | | |||| | | | || || || Sbjct 11813 ACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACGCGAA 11756 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | |||||||| || ||||| || || || ||||| ||| || ||||| Sbjct 11755 GTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCAT 11696 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | ||| ||||| || | ||| || ||||| || || || |||||||| |||||||| Sbjct 11695 TAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTC 11636 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTT 127704 ||| || || || || | | ||||| || || || ||| || | ||| | Sbjct 11635 CACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCT 11579 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 || |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 11578 CAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCG 11519 Query 127765 CTTCTTTTCTGATGGA-TCTTTGATGTAC 127792 | ||| || | ||| || ||||||||| Sbjct 11518 GTGCTTCTC-GTCGGAGTCCTTGATGTAC 11491 >seq202 Length=624202 Score = 120 bits (132), Expect = 4e-22 Identities = 377/568 (66%), Gaps = 17/568 (3%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||| |||||||| |||||||| |||||||| | |||||||| |||||| Sbjct 31090 TACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 31149 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC--ACCCCAATCTGTTTGAGGAGAC 127349 | || || ||||||| || | || ||| | | ||||| | || || | Sbjct 31150 CAGTCGAAGGGGTTCTGGACATTGTACATC-TTGCCGTATCCCAACGAGCCC-AGCAGCC 31207 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| ||| |||| |||||| |||| || |||||| || | || || Sbjct 31208 GATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCAC 31267 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG-CG 127468 | || |||||||| | | |||| | |||| || ||||| || | ||||||||| | | Sbjct 31268 ACGGCAGCGCGTCGCACACGAACTCTCTCTCGATCTCCACCGCGTTCCGTACGATCGACA 31327 Query 127469 TGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA-CA-GCAAAC 127525 | | | ||| | | ||| | | || | | | |||| | | | || || || Sbjct 31328 TCACCCGA-TCCTCGCTCAGCT-TCTTCCTCA--GCAGTGAATACAGCAAACACGCGAAG 31383 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| | |||||||| || ||||| || || || ||||| ||| || ||||| Sbjct 31384 TCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCATT 31443 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | ||| ||||| || | ||| || ||||| || || || |||||||| ||||||||| Sbjct 31444 AAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCC 31503 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 127705 || || || || || | | ||||| || || || ||| || | ||| || Sbjct 31504 ACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCTC 31560 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765 | |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 31561 AGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCGTGGAAGAGGCGG 31620 Query 127766 TTCTTTTCTGATGGA-TCTTTGATGTAC 127792 | ||| || | ||| || ||||||||| Sbjct 31621 TGCTTCTC-GTCGGAGTCCTTGATGTAC 31647 >seq122 Length=845292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/286 (67%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || || || | || | ||| |||||| ||||| | ||| ||||| || Sbjct 635900 TCAAACCGGCCAGGCCTCAGTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCA 635841 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 | || | ||| || || | | || || |||||||| || ||||| || ||||| | | Sbjct 635840 ACCACGATGATACCAGTGTTGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 635781 Query 12825 GTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCGACG 12881 |||||||| | |||||| ||| | |||| || | | | |||| || || Sbjct 635780 GTTTGTTCCCTTTCATCGTTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCAACA 635724 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAGA 12939 ||||||||||| |||| || || || || ||| ||| || ||| |||| ||| | Sbjct 635723 GCGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAA 635666 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || |||| ||||| ||||| |||||||| || ||||| Sbjct 635665 GATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 635620 >seq8 Length=1797525 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 117195 || |||||||| || |||| ||||||||||| || | || || ||||| | || Sbjct 10038 TGAGGCCTTGGAGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGA 9979 Query 117196 GACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAG 117255 |||||| | || |||| | ||||| ||| || ||| |||||| || | || Sbjct 9978 GACATCAGGTGATATGTCTTGATAACAGAATCAATATCGTCCTTGTGAATCCCAACAGAA 9919 Query 117256 ACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCT-GGAGGTA 117314 |||| ||| | ||||| ||| ||| |||||| || | | | || ||| | |||||| Sbjct 9918 ACCCTCATTAGCATGTGTTGAGGTCTTTCCA-CAACCTTGCCTTGAACCTTTAAGAGGTA 9860 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCC 117361 | | |||| | ||||||| ||||| || || ||||| |||||| Sbjct 9859 AGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCC 9813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490466591120