Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_013600.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq768 98.7 3e-16 >seq768 Length=200800 Score = 98.7 bits (108), Expect = 3e-16 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 40658 ATGAAAACCGAAATGGTTGATAAGCACGAAATCAAGATCGGCGATACGGTAGTTCACAAC 40717 |||||||| || | || |||| |||||||||||||||||||| || |||||||| Sbjct 199421 ATGAAAACGAAATTAGTGCATAAATCAGAAATCAAGATCGGCGATACTGTGATTCACAAC 199362 Query 40718 GGGGAGCTCCGCACTGTGTGCAAGCGAG-CGTTTAGCATCGATGAATTTATGGGCCTGCT 40776 || || || ||||| | ||| ||| || | | || ||||||||||||||| ||| | Sbjct 199361 GGAGAACTTAAAACTGTTGGTAAG-GAGTCGATAACCAACGATGAATTTATGGGTCTGTT 199303 Query 40777 ACTTTGGGGCGACAGCTATCGTCTAGGGTATAAACTGGTTGAG 40819 | | |||||| ||||| || || |||||| |||||||| Sbjct 199302 GTTGTTCGGCGACTCATATCGCCTGGGTTATAAAATGGTTGAG 199260 Score = 95.1 bits (104), Expect = 3e-15 Identities = 250/370 (68%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 26898 ACGGGTTTCTTCTCTGGCATACGGAAGCCGTTGCCG--GTCCATAAGCAGGTCAGCTTCG 26955 || || ||| | |||||||| ||| ||| ||| ||||| | || || ||||| Sbjct 199810 ACAGGCTTCCTTTCTGGCATGACAAAGTCGT--CCGAAGTCCAAAGACAAGTTTTCTTCG 199867 Query 26956 GATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGAGCGGGTGTACGTCATCATCCGGC 27014 | || | |||||| |||| || || |||||| |||||| |||||| || || Sbjct 199868 GGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACCAGGGGTGTGCGTCATTCTCAGGA 199926 Query 27015 AGATATCCCCCATACTCCCACGGGTCGAATGAGTGATCCGGTTTGCGCCACTGGGTG--G 27072 ||||| || ||||||||||| || | ||| | ||| || | || ||||| || || | Sbjct 199927 AGATAGCCGCCATACTCCCAGGGATTGAAAGTGTGGTCAGCCTTTCGCCA--GGCTGATG 199984 Query 27073 ATAGCACACTGCGCGGATTCTCAATCATATATGGCACTTCGAAGAAGTCACCCAGGTAAG 27132 | || || || |||||||||||| || || | ||| | | | ||||| | || | Sbjct 199985 ACAGGACGCTAACCGGATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCG 200044 Query 27133 CGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGAAAGGCTGGGTCTTTTGCACGCTTGC 27192 |||| ||| |||||| || || || ||| || || || | |||||||| Sbjct 200045 CGGCAATCCGGGCGGTGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGCTTGC 200104 Query 27193 GCGGGAAAG-CTGGCGCACCGCTCACTGCCAGATCCGTGCACGGAGGAAACG-CATAGAT 27250 || |||| | | ||||| || || ||||| || |||||||| || || | |||| || Sbjct 200105 -TGGCAAAGTGTCGAGCACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATA-AT 200162 Query 27251 GATATCTGGC 27260 || ||| ||| Sbjct 200163 GAAATCCGGC 200172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 224/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 26933 GGTCCATAAGCAGGTCAGCTTCGGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGA 26991 |||||| | || || |||||| || | |||||| |||| || || |||||| Sbjct 48844 GGTCCACAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACC 48902 Query 26992 GCGGGTGTACGTCATCATCCGGCAGATATCCCCCATACTCCCACGGGTCGAATGAGTGAT 27051 ||||| ||||||| || || ||||| || || |||||||| || | ||| ||||||| Sbjct 48903 AGGGGTGCGCGTCATCCTCAGGAAGATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGAT 48962 Query 27052 CCGGTTTGCGCCACTGGGTGGATAGCACACTGCGCGGATTCTCAATCATATATGGCACTT 27111 ||||| | |||| | || || || || |||||||||||| || || | ||| Sbjct 48963 TTGGTTTTCTCCACGCAGACGACAGGACGCTCACCGGATTCTCAATGATGTAAGTCACAC 49022 Query 27112 CGAAGAAGTCACCCAGGTAAGCGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGAAAGG 27171 | | ||||| | || || || ||| |||||| || ||||| ||| || Sbjct 49023 CAAGCTCCTCACCAATGTTCGCAGCTATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATA 49082 Query 27172 CTGGGTCTTTTGCACGCTTGCGCGGGAAAGCTG--GCGCACCGCTCACTGCCAGATCCGT 27229 || || | ||||||| | || |||| || | ||||| || || ||||| || || Sbjct 49083 ACGGATCACGTTCACGCTTAC-TGGCAAAG-TGACGAGCACCACTAACAGCCAGGTCAGT 49140 Query 27230 GCACGGA-GGAAACGCATAGATGATATCTGGC 27260 ||| ||| ||||| |||| || | ||| ||| Sbjct 49141 GCATGGAGGGAAAGCCATA-ATAAAATCCGGC 49171 Score = 87.8 bits (96), Expect = 5e-13 Identities = 224/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 26933 GGTCCATAAGCAGGTCAGCTTCGGATATGAATCGCG-GGCGTTGATGTATTCCGGGAAGA 26991 |||||| | || || |||||| || | |||||| |||| || || |||||| Sbjct 99180 GGTCCACAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCA-ATATACATCGGGAACC 99238 Query 26992 GCGGGTGTACGTCATCATCCGGCAGATATCCCCCATACTCCCACGGGTCGAATGAGTGAT 27051 ||||| ||||||| || || ||||| || || |||||||| || | ||| ||||||| Sbjct 99239 AGGGGTGCGCGTCATCCTCAGGAAGATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGAT 99298 Query 27052 CCGGTTTGCGCCACTGGGTGGATAGCACACTGCGCGGATTCTCAATCATATATGGCACTT 27111 ||||| | |||| | || || || || |||||||||||| || || | ||| Sbjct 99299 TTGGTTTTCTCCACGCAGACGACAGGACGCTCACCGGATTCTCAATGATGTAAGTCACAC 99358 Query 27112 CGAAGAAGTCACCCAGGTAAGCGGCGATCTTCGCGGTGCGCACCGCCTTAAGCTGAAAGG 27171 | | ||||| | || || || ||| |||||| || ||||| ||| || Sbjct 99359 CAAGCTCCTCACCAATGTTCGCAGCTATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATA 99418 Query 27172 CTGGGTCTTTTGCACGCTTGCGCGGGAAAGCTG--GCGCACCGCTCACTGCCAGATCCGT 27229 || || | ||||||| | || |||| || | ||||| || || ||||| || || Sbjct 99419 ACGGATCACGTTCACGCTTAC-TGGCAAAG-TGACGAGCACCACTAACAGCCAGGTCAGT 99476 Query 27230 GCACGGA-GGAAACGCATAGATGATATCTGGC 27260 ||| ||| ||||| |||| || | ||| ||| Sbjct 99477 GCATGGAGGGAAAGCCATA-ATAAAATCCGGC 99507 Score = 86.0 bits (94), Expect = 2e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 40658 ATGAAAACCGAAATGGTTGATAAGCACGAAATCAAGATCGGCGATACGGTAGTTCACAAC 40717 |||||||| || | || |||| || ||||||||||||||||| | |||||||| Sbjct 48420 ATGAAAACGAAATTAGTGCATAAATCAGAGATCAAGATCGGCGATACCATCATTCACAAC 48361 Query 40718 GGGGAGCTCCGCACTGTGTGCAAGCGAGCGTTTAGCATCGATGAATTTATGGGCCTGCTA 40777 || ||||| ||||| ||||| | | || | |||||||||||||| ||| | Sbjct 48360 GGAGAGCTTAAAACTGTTGGCAAGGATTCAATAAGTAGAGATGAATTTATGGGTCTGTTG 48301 Query 40778 CTTTGGGGCGACAGCTATCGTCTAGGGTATAAACTGGTTGAG 40819 ||| || ||| |||||| || || || ||| |||||||| Sbjct 48300 TTTTTCGGGGACTCCTATCGACTTGGTTACAAAATGGTTGAG 48259 Score = 86.0 bits (94), Expect = 2e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 40658 ATGAAAACCGAAATGGTTGATAAGCACGAAATCAAGATCGGCGATACGGTAGTTCACAAC 40717 |||||||| || | || |||| || ||||||||||||||||| | |||||||| Sbjct 98756 ATGAAAACGAAATTAGTGCATAAATCAGAGATCAAGATCGGCGATACCATCATTCACAAC 98697 Query 40718 GGGGAGCTCCGCACTGTGTGCAAGCGAGCGTTTAGCATCGATGAATTTATGGGCCTGCTA 40777 || ||||| ||||| ||||| | | || | |||||||||||||| ||| | Sbjct 98696 GGAGAGCTTAAAACTGTTGGCAAGGATTCAATAAGTAGAGATGAATTTATGGGTCTGTTG 98637 Query 40778 CTTTGGGGCGACAGCTATCGTCTAGGGTATAAACTGGTTGAG 40819 ||| || ||| |||||| || || || ||| |||||||| Sbjct 98636 TTTTTCGGGGACTCCTATCGACTTGGTTACAAAATGGTTGAG 98595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144415457918004