Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1330 163 5e-35 seq801 163 5e-35 seq202 163 5e-35 >seq1330 Length=73179 Score = 163 bits (180), Expect = 5e-35 Identities = 483/736 (66%), Gaps = 18/736 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||||||||| |||| || | || ||||| | |||| ||||| Sbjct 27033 CTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAATCGAACGGGTT 26974 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGA--GAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || || | || ||| |||| | ||||| ||||| || || ||||| || Sbjct 26973 CTGGACATTGTACATCTTGTCGTATCCCAACGAGCC--CAGCAGCCGATCCGCCACGAAC 26916 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 |||||||| | | |||| | || | ||| ||||||| |||| | || ||||| || Sbjct 26915 TCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCACACGGCAGCGCGTCG 26856 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| |||||| |||| ||||| ||||| ||| || || ||| | || || || | Sbjct 26855 CACACGAACTCCCTCTCGATCTCCACCGCGTTCCGT-ACGATCGACTTAACCCGATCCTC 26797 Query 159886 CCCCGGCTTG--CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | |||| || | ||| | |||| | ||||| ||||||||||||| Sbjct 26796 GCTGAGCTTCTTCCTCAGCAGTGA-----ATACAGCAAACACGCGAAGTCGCAGTGCAAG 26742 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||||| | ||||||||| | | || |||||||| | || ||| | Sbjct 26741 CCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 26682 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAA 160062 || |||||||| || | |||| || | || | | || || |||||||||||| ||||| Sbjct 26681 TTAAGCCAAAATATCG-CGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAA 26623 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 ||||||| | ||| | ||||| | || | | | | |||| || |||||| | Sbjct 26622 GGCCACGATTCGCTCCGCGAAAGA---CTCGGAGCCGTCGATCCATCTCAGGGCCCACTG 26566 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| |||| ||| || ||| |||| |||| || | | || || ||| | Sbjct 26565 GGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTC 26506 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||| || | | || |||||| || | ||| | || || || Sbjct 26505 GGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAAT 26446 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| ||||| ||| ||||||| | ||||| Sbjct 26445 GGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCT 26386 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| || || | || |||| ||| || ||||| || | | ||| || Sbjct 26385 CCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGA 26326 Query 160363 GATGAAATGTCTCTCG 160378 || ||| || |||||| Sbjct 26325 GACGAAGTGCCTCTCG 26310 Score = 163 bits (180), Expect = 5e-35 Identities = 483/736 (66%), Gaps = 18/736 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||||||||| |||| || | || ||||| | |||| ||||| Sbjct 46147 CTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAATCGAACGGGTT 46206 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGA--GAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || || | || ||| |||| | ||||| ||||| || || ||||| || Sbjct 46207 CTGGACATTGTACATCTTGTCGTATCCCAACGAGCC--CAGCAGCCGATCCGCCACGAAC 46264 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 |||||||| | | |||| | || | ||| ||||||| |||| | || ||||| || Sbjct 46265 TCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCACACGGCAGCGCGTCG 46324 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| |||||| |||| ||||| ||||| ||| || || ||| | || || || | Sbjct 46325 CACACGAACTCCCTCTCGATCTCCACCGCGTTCCGT-ACGATCGACTTAACCCGATCCTC 46383 Query 159886 CCCCGGCTTG--CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | |||| || | ||| | |||| | ||||| ||||||||||||| Sbjct 46384 GCTGAGCTTCTTCCTCAGCAGTGA-----ATACAGCAAACACGCGAAGTCGCAGTGCAAG 46438 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||||| | ||||||||| | | || |||||||| | || ||| | Sbjct 46439 CCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 46498 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAA 160062 || |||||||| || | |||| || | || | | || || |||||||||||| ||||| Sbjct 46499 TTAAGCCAAAATATCG-CGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAA 46557 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 ||||||| | ||| | ||||| | || | | | | |||| || |||||| | Sbjct 46558 GGCCACGATTCGCTCCGCGAAAGA---CTCGGAGCCGTCGATCCATCTCAGGGCCCACTG 46614 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| |||| ||| || ||| |||| |||| || | | || || ||| | Sbjct 46615 GGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTC 46674 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||| || | | || |||||| || | ||| | || || || Sbjct 46675 GGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAAT 46734 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| ||||| ||| ||||||| | ||||| Sbjct 46735 GGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCT 46794 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| || || | || |||| ||| || ||||| || | | ||| || Sbjct 46795 CCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGA 46854 Query 160363 GATGAAATGTCTCTCG 160378 || ||| || |||||| Sbjct 46855 GACGAAGTGCCTCTCG 46870 >seq801 Length=188201 Score = 163 bits (180), Expect = 5e-35 Identities = 483/736 (66%), Gaps = 18/736 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||||||||| |||| || | || ||||| | |||| ||||| Sbjct 12034 CTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAATCGAACGGGTT 11975 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGA--GAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || || | || ||| |||| | ||||| ||||| || || ||||| || Sbjct 11974 CTGGACATTGTACATCTTGTCGTATCCCAACGAGCC--CAGCAGCCGATCCGCCACGAAC 11917 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 |||||||| | | |||| | || | ||| ||||||| |||| | || ||||| || Sbjct 11916 TCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCACACGGCAGCGCGTCG 11857 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| |||||| |||| ||||| ||||| ||| || || ||| | || || || | Sbjct 11856 CACACGAACTCCCTCTCGATCTCCACCGCGTTCCGT-ACGATCGACTTAACCCGATCCTC 11798 Query 159886 CCCCGGCTTG--CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | |||| || | ||| | |||| | ||||| ||||||||||||| Sbjct 11797 GCTGAGCTTCTTCCTCAGCAGTGA-----ATACAGCAAACACGCGAAGTCGCAGTGCAAG 11743 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||||| | ||||||||| | | || |||||||| | || ||| | Sbjct 11742 CCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 11683 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAA 160062 || |||||||| || | |||| || | || | | || || |||||||||||| ||||| Sbjct 11682 TTAAGCCAAAATATCG-CGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAA 11624 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 ||||||| | ||| | ||||| | || | | | | |||| || |||||| | Sbjct 11623 GGCCACGATTCGCTCCGCGAAAGA---CTCGGAGCCGTCGATCCATCTCAGGGCCCACTG 11567 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| |||| ||| || ||| |||| |||| || | | || || ||| | Sbjct 11566 GGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTC 11507 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||| || | | || |||||| || | ||| | || || || Sbjct 11506 GGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAAT 11447 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| ||||| ||| ||||||| | ||||| Sbjct 11446 GGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCT 11387 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| || || | || |||| ||| || ||||| || | | ||| || Sbjct 11386 CCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGA 11327 Query 160363 GATGAAATGTCTCTCG 160378 || ||| || |||||| Sbjct 11326 GACGAAGTGCCTCTCG 11311 >seq202 Length=624202 Score = 163 bits (180), Expect = 5e-35 Identities = 483/736 (66%), Gaps = 18/736 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||||||||| |||| || | || ||||| | |||| ||||| Sbjct 31104 CTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAGTCGAAGGGGTT 31163 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGA--GAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || || | || ||| |||| | ||||| ||||| || || ||||| || Sbjct 31164 CTGGACATTGTACATCTTGCCGTATCCCAACGAGCC--CAGCAGCCGATCCGCCACGAAC 31221 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 |||||||| | | |||| | || | ||| ||||||| |||| | || ||||| || Sbjct 31222 TCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGCGCACACGGCAGCGCGTCG 31281 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| ||||| |||| ||||| ||||| ||| || || ||| | || || || | Sbjct 31282 CACACGAACTCTCTCTCGATCTCCACCGCGTTCCGT-ACGATCGACATCACCCGATCCTC 31340 Query 159886 CCCCGGCTTG--CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | | |||| || | ||| | |||| | ||||| ||||||||||||| Sbjct 31341 GCTCAGCTTCTTCCTCAGCAGTGA-----ATACAGCAAACACGCGAAGTCGCAGTGCAAG 31395 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||||| | ||||||||| | | || |||||||| | || ||| | Sbjct 31396 CCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 31455 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAA 160062 || |||||||| || | |||| || | || | | || || |||||||||||| ||||| Sbjct 31456 TTAAGCCAAAATATCG-CGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAA 31514 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || |||| | ||| | ||||| | || | | | | |||| || |||||| | Sbjct 31515 GGCTACGATTCGCTCCGCGAAAGA---CTCGGAGCCGTCGATCCATCTCAGGGCCCACTG 31571 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| |||| ||| || ||| |||| |||| || | | || || ||| | Sbjct 31572 GGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTC 31631 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||| || | | || |||||| || | ||| | || || || Sbjct 31632 GGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAAT 31691 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| ||||| ||| ||||||| | ||||| Sbjct 31692 GGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCT 31751 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| || || | ||||||| ||| || ||||| || | | ||| || Sbjct 31752 CCCAGCGAGATTTTCAAGGACAATGCCGTCGGAGGCAGCGAAGAAGGCGAGAATGTGCGA 31811 Query 160363 GATGAAATGTCTCTCG 160378 || ||| || |||||| Sbjct 31812 GACGAAGTGCCTCTCG 31827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795133512141920