Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq340 125 9e-24
seq122 120 4e-22
seq1330 105 8e-18
seq801 105 8e-18
seq202 105 8e-18
seq12 84.2 3e-11
>seq340
Length=460696
Score = 125 bits (138), Expect = 9e-24
Identities = 235/338 (70%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977
||||| ||||| | | || || || || | || | |||||| || | | ||||||
Sbjct 356509 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTTCAAAA 356568
Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037
|||||||| |||||||||||||| |||| |||||||||| |||||| ||| || |
Sbjct 356569 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---CCA 356625
Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
||| |||| | | |||| ||| || || ||||| ||||||| || || |||||
Sbjct 356626 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAA 356685
Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152
||| ||| || | | | |||| ||| ||||| || || || || || || ||||
Sbjct 356686 GGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCAA 356743
Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211
||||||| || ||||| | | | ||| || | || || || ||| | ||||||
Sbjct 356744 CAAACATTTCAACAAATTCAGAACCTGAA-ATGGAGAAAAATGGAACACCCGCTTCACCA 356802
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
||||| || || || |||||||| || || |||||
Sbjct 356803 GCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 356840
>seq122
Length=845292
Score = 120 bits (132), Expect = 4e-22
Identities = 234/338 (69%), Gaps = 12/338 (4%)
Strand=Plus/Minus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977
||||| ||||| | | || || || || | || | ||||| || | | ||||||
Sbjct 635870 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATGATACCAGTGTTGCCCTCAAAA 635811
Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037
|||||||| |||||||||||||| |||| |||||||||| |||||| ||| || |
Sbjct 635810 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---CCA 635754
Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
||| |||| | | |||| ||| || || ||||| ||||||| || || |||||
Sbjct 635753 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAA 635694
Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152
||| ||| || | | | |||| ||| ||||| || || || || || |||||||
Sbjct 635693 GGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAA 635636
Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211
||||||| || ||||| | | | | | || | || || || ||| || ||||||
Sbjct 635635 CAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 635577
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
||||| || || || |||||||| || || || ||
Sbjct 635576 GCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCCGG 635539
>seq1330
Length=73179
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 26599 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 26658
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 26659 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 26718
Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313
||||| ||||| || ||||||||
Sbjct 26719 GAGCTGATCTCGCGAGACGAGGG 26741
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 46581 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 46522
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 46521 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 46462
Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313
||||| ||||| || ||||||||
Sbjct 46461 GAGCTGATCTCGCGAGACGAGGG 46439
>seq801
Length=188201
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 11600 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 11659
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 11660 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 11719
Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313
||||| ||||| || ||||||||
Sbjct 11720 GAGCTGATCTCGCGAGACGAGGG 11742
>seq202
Length=624202
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 31538 TCTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 31479
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 31478 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 31419
Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313
||||| ||||| || ||||||||
Sbjct 31418 GAGCTGATCTCGCGAGACGAGGG 31396
>seq12
Length=1676446
Score = 84.2 bits (92), Expect = 3e-11
Identities = 189/280 (68%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| |||| ||||| |||||||| || |||| ||||||||| | |
Sbjct 85431 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--G 85488
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| ||| || || | | ||| | ||||| ||||| |||||||| ||||| || |||
Sbjct 85489 CCGCCCATCCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCGATGAACACAATG 85548
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149
|| || ||||| | || || || | ||||| || | | || ||||| |
Sbjct 85549 CACGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCCCCCACTC 85606
Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209
| ||||||| |||||| || | | || | || || || ||| || || |
Sbjct 85607 CCACAAACAACTCCACGAACTCGGAAGCCGCGCACGAGAAAAACGGGGTCCCAGCCTCTC 85666
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| || | ||| || || ||||| ||||| || ||||| ||
Sbjct 85667 CGGCCACGGCGCGAGCCAGAAGGGTCTTGCCGGTACCAGG 85706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620725469251040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |