Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq340 125 9e-24 seq122 120 4e-22 seq1330 105 8e-18 seq801 105 8e-18 seq202 105 8e-18 seq12 84.2 3e-11 >seq340 Length=460696 Score = 125 bits (138), Expect = 9e-24 Identities = 235/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| ||||| | | || || || || | || | |||||| || | | |||||| Sbjct 356509 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTTCAAAA 356568 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| |||| |||||||||| |||||| ||| || | Sbjct 356569 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---CCA 356625 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | |||| ||| || || ||||| ||||||| || || ||||| Sbjct 356626 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAA 356685 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 ||| ||| || | | | |||| ||| ||||| || || || || || || |||| Sbjct 356686 GGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCAA 356743 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 ||||||| || ||||| | | | ||| || | || || || ||| | |||||| Sbjct 356744 CAAACATTTCAACAAATTCAGAACCTGAA-ATGGAGAAAAATGGAACACCCGCTTCACCA 356802 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || || || |||||||| || || ||||| Sbjct 356803 GCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 356840 >seq122 Length=845292 Score = 120 bits (132), Expect = 4e-22 Identities = 234/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| ||||| | | || || || || | || | ||||| || | | |||||| Sbjct 635870 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATGATACCAGTGTTGCCCTCAAAA 635811 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| |||| |||||||||| |||||| ||| || | Sbjct 635810 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---CCA 635754 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | |||| ||| || || ||||| ||||||| || || ||||| Sbjct 635753 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAA 635694 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 ||| ||| || | | | |||| ||| ||||| || || || || || ||||||| Sbjct 635693 GGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAA 635636 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 ||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 635635 CAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 635577 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || || || |||||||| || || || || Sbjct 635576 GCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCCGG 635539 >seq1330 Length=73179 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 26599 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 26658 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 26659 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 26718 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || |||||||| Sbjct 26719 GAGCTGATCTCGCGAGACGAGGG 26741 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 46581 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 46522 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 46521 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 46462 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || |||||||| Sbjct 46461 GAGCTGATCTCGCGAGACGAGGG 46439 >seq801 Length=188201 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 11600 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 11659 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 11660 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 11719 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || |||||||| Sbjct 11720 GAGCTGATCTCGCGAGACGAGGG 11742 >seq202 Length=624202 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 31538 TCTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 31479 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 31478 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 31419 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || |||||||| Sbjct 31418 GAGCTGATCTCGCGAGACGAGGG 31396 >seq12 Length=1676446 Score = 84.2 bits (92), Expect = 3e-11 Identities = 189/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| ||||| |||||||| || |||| ||||||||| | | Sbjct 85431 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--G 85488 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| || || | | ||| | ||||| ||||| |||||||| ||||| || ||| Sbjct 85489 CCGCCCATCCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCGATGAACACAATG 85548 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| | || || || | ||||| || | | || ||||| | Sbjct 85549 CACGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCCCCCACTC 85606 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| |||||| || | | || | || || || ||| || || | Sbjct 85607 CCACAAACAACTCCACGAACTCGGAAGCCGCGCACGAGAAAAACGGGGTCCCAGCCTCTC 85666 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || | ||| || || ||||| ||||| || ||||| || Sbjct 85667 CGGCCACGGCGCGAGCCAGAAGGGTCTTGCCGGTACCAGG 85706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620725469251040