Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq340 129 7e-25 seq122 123 3e-23 seq8 104 3e-17 >seq340 Length=460696 Score = 129 bits (142), Expect = 7e-25 Identities = 235/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| ||||| | | || ||||| || | || | |||||| |||| | || ||| Sbjct 356509 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTT--CAA 356566 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| ||||||||||| || |||| |||||||||| |||||| ||| || Sbjct 356567 AACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---C 356623 Query 9343 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 |||| |||| | | |||| ||| || || ||||| ||||||| || ||||| | Sbjct 356624 CACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGC 356683 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| ||| || ||| | | ||| ||||| ||||| | || || || |||| Sbjct 356684 AAGGTGCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCAA 356743 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 ||||||| || ||||| | | | ||| || | || || || ||| | |||||| Sbjct 356744 CAAACATTTCAACAAATTCAGAACCTGAA-ATGGAGAAAAATGGAACACCCGCTTCACCA 356802 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || || || |||||||| || || ||||| Sbjct 356803 GCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 356840 >seq122 Length=845292 Score = 123 bits (136), Expect = 3e-23 Identities = 348/527 (66%), Gaps = 12/527 (2%) Strand=Plus/Minus Query 9036 TCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATACTC 9095 ||||||||||| |||||||| ||||| ||| ||| || | || | || | | ||| Sbjct 636059 TCATTAAGGAGGTTTGCGAGATCAGCCCCACTGAAGCCAG--GTGTCCTCATGGCTACAA 636002 Query 9096 C-TCAACTTGACATCTTC-AGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCT 9153 | |||| | |||| | | |||||||||| | || ||||| ||||||| Sbjct 636001 CATCAAGAGAAACACTTCCATCAAACTTCTTATTGCTAGCATGAACCTTTAAGATCTCTG 635942 Query 9154 CGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAA 9213 | ||| |||| |||| | | || | || | ||||| || || || | | Sbjct 635941 TTCTTCCTCGAATGTCAGGGACATCAACAGACACCTGCCTGTCAAACCGGCCAGGCCTCA 635882 Query 9214 GGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTT 9273 | | || ||||| ||||| | | || ||||| || | || | ||||| || | Sbjct 635881 GTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATGATACCAGTGT 635822 Query 9274 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9333 |||||||||||||| ||||||||||| || |||| |||||||||| |||||| | Sbjct 635821 TGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGT 635762 Query 9334 TCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGA 9390 || || |||| |||| | | |||| ||| || || ||||| ||||||| | Sbjct 635761 TCCCT---CCACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAA 635705 Query 9391 AGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGC 9450 | ||||| || ||| ||| || ||| | | ||| ||||| ||||| | || | Sbjct 635704 ATACAATGCAAGGTGCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCAC 635645 Query 9451 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTA 9509 | |||||||||||||| || ||||| | | | | | || | || || || ||| | Sbjct 635644 CAACACCAACAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCA 635586 Query 9510 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | |||||| ||||| || || || |||||||| || || || || Sbjct 635585 GCTTCACCAGCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCCGG 635539 >seq8 Length=1797525 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || ||||| || |||| |||||||||||| || | || ||| ||||| | || Sbjct 10039 CTGAGGCCTTGGAGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 9980 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || ||||||| | ||||||||||| || ||| ||| || || | | Sbjct 9979 AGACATCAGGTGATATGTCTTGATAACAGAATCAATATCGTCCTTGTGAATCCCAACAGA 9920 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| | ||||| ||| ||| |||||| | |||| | || || || | || | Sbjct 9919 AACCCTCATTAGCATGTGTTGAGGTCTTTCCACAACCTTGCC-TTGAACCTTTAAGAGGT 9861 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||| || |||| ||||||||| || | ||| ||||||| Sbjct 9860 AAGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 9812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964708273680