Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq222 95.1 1e-14
seq41 84.2 3e-11
>seq222
Length=596275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434
|||||||| |||| ||| || || | |||||||| ||||| ||||| ||| | |||
Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828
Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494
||||| ||||| |||| ||||| || || || | ||||||| || ||||| |||
Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888
Query 180495 AACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526
|| || | ||||| | ||||||||||| ||
Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 106920
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434
|||||||| |||| ||| || || | |||||||| ||||| ||||| ||| | |||
Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783
Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494
||||| ||||| |||| ||||| || || || | ||||||| || ||||| |||
Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723
Query 180495 AACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526
|| || | ||||| | ||||||||||| ||
Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 179691
>seq41
Length=1285553
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/173 (72%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966
|||| ||||| || || || || || |||| || || |||||| | || || | |
Sbjct 342946 TTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGGTCTT 343005
Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCA-ATCTTTC 172025
| ||| || || || || ||| |||||| | || |||||||| || || | |||||
Sbjct 343006 GCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGCTTTC 343065
Query 172026 CTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCC 172078
| ||||||||||| || | || ||||| || |||||||| || ||||||||
Sbjct 343066 -TGGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCTTATCC 343117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610380151427280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |