Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq146 87.8 2e-12 >seq3 Length=3914344 Score = 118 bits (130), Expect = 1e-21 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| ||| | ||| ||||||||| |||| ||||| ||||||||||||||| Sbjct 1733679 GATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTTCCAATGGGGTATGGAGGTCCTCAT 1733620 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 || || ||| | || || || | |||| ||||| | ||| || || |||||| | | Sbjct 1733619 GCGGCTTTCCTCGCCACCTCACAAGAGTACAAGAGGATGATGCCAGGGAGAATTATCGGT 1733560 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || || ||| || || | | | || | ||||| || |||| Sbjct 1733559 GTTAGT--GTTGACTCCTCAGGGAAGCCTGCGTTGCGTATGGCGATGCAGACAAGGGAGC 1733502 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 |||||||| |||| ||||| || ||||| ||||| ||||| ||||||| Sbjct 1733501 AGCATATCCGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGG 1733454 >seq146 Length=786261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGAT-GGTCTGG 170587 |||||| || | || ||||||||| ||| || || || || || |||| | ||||||| Sbjct 94870 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGGTTGGTCTGG 94811 Query 170588 TCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTT 170647 || ||||| | ||||||||||| | | | || ||||||||| ||| || ||||| Sbjct 94810 CCTATTACTCTTTCCTTGTGCATATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 94751 Query 170648 CGTTACATCATGGTATAC 170665 || || ||||||||||| Sbjct 94750 TGTAACTTCATGGTATAC 94733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579197001970880