Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq3 100 3e-16
seq146 87.8 2e-12
>seq3
Length=3914344
Score = 100 bits (110), Expect = 3e-16
Identities = 159/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481
|| |||| ||| ||| | ||| ||||||||| |||| ||||| || ||||||||||||
Sbjct 1733679 GATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTTCCAATGGGGTATGGAGGTCCTCAT 1733620
Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 158539
|| || ||| | || || || | |||| ||||| | ||| || || |||||| | |
Sbjct 1733619 GCGGCTTTCCTCGCCACCTCACAAGAGTACAAGAGGATGATGCCAGGGAGAATTATCGGT 1733560
Query 158540 GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599
|| ||| || || | ||| || || | | | || | ||||| || ||||
Sbjct 1733559 GTTAGT--GTTGACTCCTCAGGGAAGCCTGCGTTGCGTATGGCGATGCAGACAAGGGAGC 1733502
Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACA 158645
|||||||| | || ||||| || ||||| ||||| ||||| || ||
Sbjct 1733501 AGCATATCCGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCA 1733456
>seq146
Length=786261
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/138 (75%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGAT-GGTCTGG 173009
|||||| || | || ||||||||| ||| || || ||||| || | || | |||||||
Sbjct 94870 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGGTTGGTCTGG 94811
Query 173010 TCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTT 173069
|| ||||| | |||||||| || | || | || ||||||||| ||| || |||||
Sbjct 94810 CCTATTACTCTTTCCTTGTGCATATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 94751
Query 173070 CGTTACATCATGGTATAC 173087
|| || |||||||||||
Sbjct 94750 TGTAACTTCATGGTATAC 94733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588035160903520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |