Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq222 100 3e-16 seq435 82.4 9e-11 >seq222 Length=596275 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 170310 AATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGA 170369 |||| | || || ||||| || || || || | || |||||||| || ||||| || Sbjct 106762 AATCTGGGAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGA 106821 Query 170370 AGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGC 170429 | |||| ||||| || || || | ||||| || ||||| || | ||||| |||||||| Sbjct 106822 AAAAACCTACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGC 106881 Query 170430 TAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 ||| || || ||| ||||| | | ||||||||||| ||| Sbjct 106882 TAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTAGCT 106921 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 170310 AATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGA 170369 |||| | || || ||||| || || || || | || |||||||| || ||||| || Sbjct 179849 AATCTGGGAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGA 179790 Query 170370 AGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGC 170429 | |||| ||||| || || || | ||||| || ||||| || | ||||| |||||||| Sbjct 179789 AAAAACCTACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGC 179730 Query 170430 TAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 ||| || || ||| ||||| | | ||||||||||| ||| Sbjct 179729 TAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTAGCT 179690 >seq435 Length=389137 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || ||||||||||| ||||| ||||||| ||| | || || || | ||||| || ||| Sbjct 3078 GGTTACAAATTCGGGCAAGAGGAAGAAATCTACTATATCGTAGCTGTTCATGGTTATTTT 3137 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 || | | || || ||||||||||| || || ||| ||||| | | |||||||||| Sbjct 3138 GGCTTATTAATTTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTAGACTTCTTCCTA 3197 Query 170467 GCT 170469 ||| Sbjct 3198 GCT 3200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || ||||||||||| ||||| ||||||| ||| | || || || | ||||| || ||| Sbjct 109261 GGTTACAAATTCGGGCAAGAGGAAGAAATCTACTATATCGTAGCTGTTCATGGTTATTTT 109202 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 || | | || || ||||||||||| || || ||| ||||| | | |||||||||| Sbjct 109201 GGCTTATTAATTTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTAGACTTCTTCCTA 109142 Query 170467 GCT 170469 ||| Sbjct 109141 GCT 109139 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || ||||||||||| ||||| ||||||| ||| | || || || | ||||| || ||| Sbjct 171443 GGTTACAAATTCGGGCAAGAGGAAGAAATCTACTATATCGTAGCTGTTCATGGTTATTTT 171502 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 || | | || || ||||||||||| || || ||| ||||| | | |||||||||| Sbjct 171503 GGCTTATTAATTTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTAGACTTCTTCCTA 171562 Query 170467 GCT 170469 ||| Sbjct 171563 GCT 171565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582832102820800