Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq8 127 2e-24
seq129 82.4 9e-11
seq22 82.4 9e-11
>seq8
Length=1797525
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | |||||||| ||| ||||||| |||||||| ||||| |||
Sbjct 10362 CCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 10303
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || | ||||| ||||| ||||||||| || | || | || ||| || |||
Sbjct 10302 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 10243
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| || | |||||| ||| | ||||||||||||
Sbjct 10242 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 10183
Query 48540 CCTTCTATACTATCATCTATCAT 48562
||||| || ||||||||| ||||
Sbjct 10182 CCTTCAATGCTATCATCTTTCAT 10160
Score = 82.4 bits (90), Expect = 9e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||| ||||| || | || ||||| |||||| | ||||| || || | || |
Sbjct 10027 AGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGGTG 9968
Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717
|||||| | ||||||||||| ||||| | ||| || || || | ||| || | |||||
Sbjct 9967 ATATGTCTTGATAACAGAATCAATATCGTCCTTG-TGAATCCCAACAGAAACCCTCATTA 9909
Query 48718 ACATATATTGAGGTCTTTCAACAA 48741
||| | |||||||||||| ||||
Sbjct 9908 GCATGTGTTGAGGTCTTTCCACAA 9885
>seq129
Length=826992
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||||||||| || || ||||| |||||| ||| | || || || ||||| ||
Sbjct 115567 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 115508
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|||||||| ||||| || ||||| | |||||||||
Sbjct 115507 CCAGGCATTAGTCCCCTCTTTTTAAGCCAGAATAT 115473
>seq22
Length=1467039
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||||||||| || || ||||| |||||| ||| | || || || ||||| ||
Sbjct 15043 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 15102
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|||||||| ||||| || ||||| | |||||||||
Sbjct 15103 CCAGGCATTAGTCCCCTCTTTTTAAGCCAGAATAT 15137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562093468482480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |