Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 127 2e-24 seq129 82.4 9e-11 seq22 82.4 9e-11 >seq8 Length=1797525 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| ||||||| |||||||| ||||| ||| Sbjct 10362 CCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 10303 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| || | || | || ||| || ||| Sbjct 10302 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 10243 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | |||||| ||| | |||||||||||| Sbjct 10242 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 10183 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 10182 CCTTCAATGCTATCATCTTTCAT 10160 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| ||||| || | || ||||| |||||| | ||||| || || | || | Sbjct 10027 AGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGGTG 9968 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | ||||||||||| ||||| | ||| || || || | ||| || | ||||| Sbjct 9967 ATATGTCTTGATAACAGAATCAATATCGTCCTTG-TGAATCCCAACAGAAACCCTCATTA 9909 Query 48718 ACATATATTGAGGTCTTTCAACAA 48741 ||| | |||||||||||| |||| Sbjct 9908 GCATGTGTTGAGGTCTTTCCACAA 9885 >seq129 Length=826992 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || ||||| |||||| ||| | || || || ||||| || Sbjct 115567 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 115508 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||| ||||| || ||||| | ||||||||| Sbjct 115507 CCAGGCATTAGTCCCCTCTTTTTAAGCCAGAATAT 115473 >seq22 Length=1467039 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || ||||| |||||| ||| | || || || ||||| || Sbjct 15043 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 15102 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||| ||||| || ||||| | ||||||||| Sbjct 15103 CCAGGCATTAGTCCCCTCTTTTTAAGCCAGAATAT 15137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093468482480