Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_019419.2 Length=43457 Score E Sequences producing significant alignments: (Bits) Value seq768 125 2e-24 >seq768 Length=200800 Score = 125 bits (138), Expect = 2e-24 Identities = 256/373 (69%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 18298 GGCACGCCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCG 18357 |||| ||||||| ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 200177 GGCAAGCCGGATTTCATTATGGCCTTCCCGCCGTGCACTGACCTGGCCGTTAGTGGTGCT 200118 Query 18358 CC-CGCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGCAC 18416 | | |||| || |||| || || || || |||||| || || || ||| Sbjct 200117 CGACACTTTGCCA-GCAAGCGTAAACGTGATCCGCTATTCCAGGAGAAAGCTGTTGCCAC 200059 Query 18417 CGCGAAGATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCC 18476 ||| |||||| || || | |||||| | | | ||| | || || ||||||||||| Sbjct 200058 CGCCCGGATTGCCGCGAACATCGGTGATAGCCTGGGTGTGACTTACATCATTGAGAATCC 199999 Query 18477 GCGCAGCGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTA 18536 | ||||| || || | ||||| ||| | |||||| | || | || |||||||| Sbjct 199998 GGTTAGCGTCCTGTCATCAGCCTGGCGAAAGGCTGACCACACTTTCAATCCCTGGGAGTA 199939 Query 18537 TGGCGGATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-C 18595 |||||| ||||| || ||| ||||| |||||| |||||| || || |||| | Sbjct 199938 TGGCGGCTATCTTCCTGAGAATGACGCACACCCCTGGTTCCCGATGTATAT-TGCGCCGC 199880 Query 18596 GCGATTCATATCCGAAGCTGACCTGCTTATGGAC--CGGCAACGGCTTCCGTATGCCAGA 18653 ||||| | || |||||| || || | ||||| ||| ||| ||| |||||||| Sbjct 199879 GCGATGCTTACCCGAAGAAAACTTGTCTTTGGACTTCGG--ACGACTTTGTCATGCCAGA 199822 Query 18654 GAAAAAGCCGGTA 18666 | ||||| ||| Sbjct 199821 AAGGAAGCCTGTA 199809 Score = 96.9 bits (106), Expect = 1e-15 Identities = 247/371 (67%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 18298 GGCACGCCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCG 18357 |||| ||||||| | ||| || ||||| || || || || ||||| || ||||| || Sbjct 49176 GGCAAGCCGGATTTTATTATGGCTTTCCCTCCATGCACTGACCTGGCTGTTAGTGGTGCT 49117 Query 18358 CC-CGCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGCAC 18416 | | |||| || | || || | || || || |||||| ||||| || ||| Sbjct 49116 CGTCACTTTGCCA-GTAAGCGTGAACGTGATCCGTTATTCCAGGAGAAGGCTGTTGCCAC 49058 Query 18417 CGCGAAGATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCC 18476 ||| ||| || || || | ||||| ||| ||| | || || ||||||||||| Sbjct 49057 CGCTCGGATAGCTGCGAACATTGGTGAGGAGCTTGGTGTGACTTACATCATTGAGAATCC 48998 Query 18477 GCGCAGCGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTA 18536 | ||||| || || || ||| | || || | ||||| || | || |||||||| Sbjct 48997 GGTGAGCGTCCTGTCGTCTGCGTGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTA 48938 Query 18537 TGGCGGATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-C 18595 ||||| ||||| || |||| ||||| ||||| |||||| || || |||| | Sbjct 48937 CGGCGGCTATCTTCCTGAGGATGACGCGCACCCCTGGTTCCCGATGTATAT-TGCGCCGC 48879 Query 18596 GCGATTCATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 18655 ||||| | || |||||| || || | |||||| ||| || ||||| |||| Sbjct 48878 GCGATGCTTACCCGAAGAAAACTTGTCTGTGGACCTCTGACGATTTTGTCATGCCCGAGA 48819 Query 18656 AAAAGCCGGTA 18666 ||| || ||| Sbjct 48818 GAAAACCTGTA 48808 Score = 96.9 bits (106), Expect = 1e-15 Identities = 247/371 (67%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 18298 GGCACGCCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCG 18357 |||| ||||||| | ||| || ||||| || || || || ||||| || ||||| || Sbjct 99512 GGCAAGCCGGATTTTATTATGGCTTTCCCTCCATGCACTGACCTGGCTGTTAGTGGTGCT 99453 Query 18358 CC-CGCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGCAC 18416 | | |||| || | || || | || || || |||||| ||||| || ||| Sbjct 99452 CGTCACTTTGCCA-GTAAGCGTGAACGTGATCCGTTATTCCAGGAGAAGGCTGTTGCCAC 99394 Query 18417 CGCGAAGATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCC 18476 ||| ||| || || || | ||||| ||| ||| | || || ||||||||||| Sbjct 99393 CGCTCGGATAGCTGCGAACATTGGTGAGGAGCTTGGTGTGACTTACATCATTGAGAATCC 99334 Query 18477 GCGCAGCGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTA 18536 | ||||| || || || ||| | || || | ||||| || | || |||||||| Sbjct 99333 GGTGAGCGTCCTGTCGTCTGCGTGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTA 99274 Query 18537 TGGCGGATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-C 18595 ||||| ||||| || |||| ||||| ||||| |||||| || || |||| | Sbjct 99273 CGGCGGCTATCTTCCTGAGGATGACGCGCACCCCTGGTTCCCGATGTATAT-TGCGCCGC 99215 Query 18596 GCGATTCATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 18655 ||||| | || |||||| || || | |||||| ||| || ||||| |||| Sbjct 99214 GCGATGCTTACCCGAAGAAAACTTGTCTGTGGACCTCTGACGATTTTGTCATGCCCGAGA 99155 Query 18656 AAAAGCCGGTA 18666 ||| || ||| Sbjct 99154 GAAAACCTGTA 99144 Score = 84.2 bits (92), Expect = 6e-12 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 6236 CTCAACCAGTTTATGCCCTAAACGATAGCTGTCGCCCCAAAGTAGCAGGCCCATAAATTC 6295 |||||||| ||||| || | ||||| |||||| | | | ||| ||||||||||| Sbjct 199260 CTCAACCATTTTATAACCCAGGCGATATGAGTCGCCGAACAACAACAGACCCATAAATTC 199319 Query 6296 ATCGATGCTAAACG-CTCGCCTGCACACAGTGCGAAGCTCCCCGTTGTGGACTACCGTAT 6354 |||| || | | || ||| | | | ||||| ||| || |||||||| | || |||| Sbjct 199320 ATCGTTGGTTATCGACTC-CTTACCAACAGTTTTAAGTTCTCCGTTGTGAATCACAGTAT 199378 Query 6355 CGCCGATCTTGATTTCGTGCTTATCAACCATTTCGGTTTTCAT 6397 |||||||||||||||| |||| || | || |||||||| Sbjct 199379 CGCCGATCTTGATTTCTGATTTATGCACTAATTTCGTTTTCAT 199421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138937199870196