Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_019419.2
Length=43457
Score E
Sequences producing significant alignments: (Bits) Value
seq768 125 2e-24
>seq768
Length=200800
Score = 125 bits (138), Expect = 2e-24
Identities = 256/373 (69%), Gaps = 8/373 (2%)
Strand=Plus/Minus
Query 18298 GGCACGCCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCG 18357
|||| ||||||| ||||| || ||||||||||| || || ||||| || ||||| ||
Sbjct 200177 GGCAAGCCGGATTTCATTATGGCCTTCCCGCCGTGCACTGACCTGGCCGTTAGTGGTGCT 200118
Query 18358 CC-CGCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGCAC 18416
| | |||| || |||| || || || || |||||| || || || |||
Sbjct 200117 CGACACTTTGCCA-GCAAGCGTAAACGTGATCCGCTATTCCAGGAGAAAGCTGTTGCCAC 200059
Query 18417 CGCGAAGATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCC 18476
||| |||||| || || | |||||| | | | ||| | || || |||||||||||
Sbjct 200058 CGCCCGGATTGCCGCGAACATCGGTGATAGCCTGGGTGTGACTTACATCATTGAGAATCC 199999
Query 18477 GCGCAGCGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTA 18536
| ||||| || || | ||||| ||| | |||||| | || | || ||||||||
Sbjct 199998 GGTTAGCGTCCTGTCATCAGCCTGGCGAAAGGCTGACCACACTTTCAATCCCTGGGAGTA 199939
Query 18537 TGGCGGATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-C 18595
|||||| ||||| || ||| ||||| |||||| |||||| || || |||| |
Sbjct 199938 TGGCGGCTATCTTCCTGAGAATGACGCACACCCCTGGTTCCCGATGTATAT-TGCGCCGC 199880
Query 18596 GCGATTCATATCCGAAGCTGACCTGCTTATGGAC--CGGCAACGGCTTCCGTATGCCAGA 18653
||||| | || |||||| || || | ||||| ||| ||| ||| ||||||||
Sbjct 199879 GCGATGCTTACCCGAAGAAAACTTGTCTTTGGACTTCGG--ACGACTTTGTCATGCCAGA 199822
Query 18654 GAAAAAGCCGGTA 18666
| ||||| |||
Sbjct 199821 AAGGAAGCCTGTA 199809
Score = 96.9 bits (106), Expect = 1e-15
Identities = 247/371 (67%), Gaps = 4/371 (1%)
Strand=Plus/Minus
Query 18298 GGCACGCCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCG 18357
|||| ||||||| | ||| || ||||| || || || || ||||| || ||||| ||
Sbjct 49176 GGCAAGCCGGATTTTATTATGGCTTTCCCTCCATGCACTGACCTGGCTGTTAGTGGTGCT 49117
Query 18358 CC-CGCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGCAC 18416
| | |||| || | || || | || || || |||||| ||||| || |||
Sbjct 49116 CGTCACTTTGCCA-GTAAGCGTGAACGTGATCCGTTATTCCAGGAGAAGGCTGTTGCCAC 49058
Query 18417 CGCGAAGATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCC 18476
||| ||| || || || | ||||| ||| ||| | || || |||||||||||
Sbjct 49057 CGCTCGGATAGCTGCGAACATTGGTGAGGAGCTTGGTGTGACTTACATCATTGAGAATCC 48998
Query 18477 GCGCAGCGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTA 18536
| ||||| || || || ||| | || || | ||||| || | || ||||||||
Sbjct 48997 GGTGAGCGTCCTGTCGTCTGCGTGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTA 48938
Query 18537 TGGCGGATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-C 18595
||||| ||||| || |||| ||||| ||||| |||||| || || |||| |
Sbjct 48937 CGGCGGCTATCTTCCTGAGGATGACGCGCACCCCTGGTTCCCGATGTATAT-TGCGCCGC 48879
Query 18596 GCGATTCATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 18655
||||| | || |||||| || || | |||||| ||| || ||||| ||||
Sbjct 48878 GCGATGCTTACCCGAAGAAAACTTGTCTGTGGACCTCTGACGATTTTGTCATGCCCGAGA 48819
Query 18656 AAAAGCCGGTA 18666
||| || |||
Sbjct 48818 GAAAACCTGTA 48808
Score = 96.9 bits (106), Expect = 1e-15
Identities = 247/371 (67%), Gaps = 4/371 (1%)
Strand=Plus/Minus
Query 18298 GGCACGCCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCG 18357
|||| ||||||| | ||| || ||||| || || || || ||||| || ||||| ||
Sbjct 99512 GGCAAGCCGGATTTTATTATGGCTTTCCCTCCATGCACTGACCTGGCTGTTAGTGGTGCT 99453
Query 18358 CC-CGCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGCAC 18416
| | |||| || | || || | || || || |||||| ||||| || |||
Sbjct 99452 CGTCACTTTGCCA-GTAAGCGTGAACGTGATCCGTTATTCCAGGAGAAGGCTGTTGCCAC 99394
Query 18417 CGCGAAGATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCC 18476
||| ||| || || || | ||||| ||| ||| | || || |||||||||||
Sbjct 99393 CGCTCGGATAGCTGCGAACATTGGTGAGGAGCTTGGTGTGACTTACATCATTGAGAATCC 99334
Query 18477 GCGCAGCGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTA 18536
| ||||| || || || ||| | || || | ||||| || | || ||||||||
Sbjct 99333 GGTGAGCGTCCTGTCGTCTGCGTGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTA 99274
Query 18537 TGGCGGATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-C 18595
||||| ||||| || |||| ||||| ||||| |||||| || || |||| |
Sbjct 99273 CGGCGGCTATCTTCCTGAGGATGACGCGCACCCCTGGTTCCCGATGTATAT-TGCGCCGC 99215
Query 18596 GCGATTCATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 18655
||||| | || |||||| || || | |||||| ||| || ||||| ||||
Sbjct 99214 GCGATGCTTACCCGAAGAAAACTTGTCTGTGGACCTCTGACGATTTTGTCATGCCCGAGA 99155
Query 18656 AAAAGCCGGTA 18666
||| || |||
Sbjct 99154 GAAAACCTGTA 99144
Score = 84.2 bits (92), Expect = 6e-12
Identities = 118/163 (72%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 6236 CTCAACCAGTTTATGCCCTAAACGATAGCTGTCGCCCCAAAGTAGCAGGCCCATAAATTC 6295
|||||||| ||||| || | ||||| |||||| | | | ||| |||||||||||
Sbjct 199260 CTCAACCATTTTATAACCCAGGCGATATGAGTCGCCGAACAACAACAGACCCATAAATTC 199319
Query 6296 ATCGATGCTAAACG-CTCGCCTGCACACAGTGCGAAGCTCCCCGTTGTGGACTACCGTAT 6354
|||| || | | || ||| | | | ||||| ||| || |||||||| | || ||||
Sbjct 199320 ATCGTTGGTTATCGACTC-CTTACCAACAGTTTTAAGTTCTCCGTTGTGAATCACAGTAT 199378
Query 6355 CGCCGATCTTGATTTCGTGCTTATCAACCATTTCGGTTTTCAT 6397
|||||||||||||||| |||| || | || ||||||||
Sbjct 199379 CGCCGATCTTGATTTCTGATTTATGCACTAATTTCGTTTTCAT 199421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138937199870196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |