Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1330 154 3e-32 seq801 154 3e-32 seq202 152 1e-31 >seq1330 Length=73179 Score = 154 bits (170), Expect = 3e-32 Identities = 382/570 (67%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||||| |||||||||||||| | || |||||||||||| ||| | || Sbjct 26209 GAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGAC 26268 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||||| | |||| | || |||||| | | |||| ||| || || | Sbjct 26269 CTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 26328 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 26329 CACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGG 26388 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | | ||| || ||| || |||||| |||||||| |||||||| ||||| Sbjct 26389 TTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATT 26448 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | ||| || | Sbjct 26449 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGAC 26508 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 26509 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 26568 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| ||| |||||| || || | ||| | || | ||||| | || ||||| Sbjct 26569 TGGGCCCTGAGATGGATCGACGGCTCCGAG----TCTTTCGCGGAGCGAATCGTGGCCTT 26624 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCTCAAG 25950 || |||| |||||||| || || ||| ||| |||| | || || || ||||| || Sbjct 26625 TGCCTGC-GTGGAGGGGATTTTCTTC-TCGGGGAGTTTCTGCGCGATATTTTGGCTTAAA 26682 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || ||||| || ||| ||||| ||||||||||| ||| | |||||||| Sbjct 26683 AAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGG 26741 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 | ||| | || || || || |||| || Sbjct 26742 CTTGCACTGCGACTTCGCGTGTTTGCTGTA 26771 Score = 154 bits (170), Expect = 3e-32 Identities = 382/570 (67%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||||| |||||||||||||| | || |||||||||||| ||| | || Sbjct 46971 GAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGAC 46912 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||||| | |||| | || |||||| | | |||| ||| || || | Sbjct 46911 CTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 46852 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 46851 CACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGG 46792 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | | ||| || ||| || |||||| |||||||| |||||||| ||||| Sbjct 46791 TTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATT 46732 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | ||| || | Sbjct 46731 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGAC 46672 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 46671 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 46612 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| ||| |||||| || || | ||| | || | ||||| | || ||||| Sbjct 46611 TGGGCCCTGAGATGGATCGACGGCTCCGAG----TCTTTCGCGGAGCGAATCGTGGCCTT 46556 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCTCAAG 25950 || |||| |||||||| || || ||| ||| |||| | || || || ||||| || Sbjct 46555 TGCCTGC-GTGGAGGGGATTTTCTTC-TCGGGGAGTTTCTGCGCGATATTTTGGCTTAAA 46498 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || ||||| || ||| ||||| ||||||||||| ||| | |||||||| Sbjct 46497 AAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGG 46439 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 | ||| | || || || || |||| || Sbjct 46438 CTTGCACTGCGACTTCGCGTGTTTGCTGTA 46409 >seq801 Length=188201 Score = 154 bits (170), Expect = 3e-32 Identities = 382/570 (67%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||||| |||||||||||||| | || |||||||||||| ||| | || Sbjct 11210 GAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGAC 11269 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||||| | |||| | || |||||| | | |||| ||| || || | Sbjct 11270 CTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 11329 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 11330 CACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGG 11389 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | | ||| || ||| || |||||| |||||||| |||||||| ||||| Sbjct 11390 TTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATT 11449 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | ||| || | Sbjct 11450 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGAC 11509 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 11510 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 11569 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| ||| |||||| || || | ||| | || | ||||| | || ||||| Sbjct 11570 TGGGCCCTGAGATGGATCGACGGCTCCGAG----TCTTTCGCGGAGCGAATCGTGGCCTT 11625 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCTCAAG 25950 || |||| |||||||| || || ||| ||| |||| | || || || ||||| || Sbjct 11626 TGCCTGC-GTGGAGGGGATTTTCTTC-TCGGGGAGTTTCTGCGCGATATTTTGGCTTAAA 11683 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || ||||| || ||| ||||| ||||||||||| ||| | |||||||| Sbjct 11684 AAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGG 11742 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 | ||| | || || || || |||| || Sbjct 11743 CTTGCACTGCGACTTCGCGTGTTTGCTGTA 11772 >seq202 Length=624202 Score = 152 bits (168), Expect = 1e-31 Identities = 382/571 (67%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 25473 AGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGA 25532 ||| |||||||| |||||||||||||| | ||| |||||||||||| ||| | || Sbjct 31929 AGAAATATGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGA 31870 Query 25533 TCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 || | ||||||| | ||| | || |||||| | | |||| ||| || || Sbjct 31869 CCTATGCCAGGACATCCGCCAGTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTC 31810 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | || | | || ||||| || ||||| || || || || || ||||| | ||| Sbjct 31809 GCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTCCTTGAAAATCTCGCTGGGAG 31750 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 || | | ||| || ||| || |||||| |||||||| |||||||| ||||| Sbjct 31749 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCAT 31690 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| |||| | ||||| ||||||||| | ||| || Sbjct 31689 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 31630 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| | || || || || ||||| ||| || || || || |||||| | Sbjct 31629 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCTTGCGTCGCGAAGAAGGCCCA 31570 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||| ||| |||||| || || | ||| | || | ||||| | ||||||| Sbjct 31569 GTGGGCCCTGAGATGGATCGACGGCTCCGAG----TCTTTCGCGGAGCGAATCGTAGCCT 31514 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCTCAA 25949 ||| |||| |||||||| || || ||| ||| |||| | || || || ||||| || Sbjct 31513 TTGCCTGC-GTGGAGGGGATTTTCTTC-TCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 31456 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || ||||| || ||| ||||| ||||||||||| ||| | ||||||| Sbjct 31455 AAAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCCAACGAGCTGATCTCGCGAGACGAGG 31397 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 | | ||| | || || || || |||| || Sbjct 31396 GCTTGCACTGCGACTTCGCGTGTTTGCTGTA 31366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928819465758080