Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_019724.1 Length=43741 Score E Sequences producing significant alignments: (Bits) Value seq768 123 7e-24 >seq768 Length=200800 Score = 123 bits (136), Expect = 7e-24 Identities = 255/372 (69%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 26408 ACAGGTTTCTTCTCGGGCATACGGAAGCCGTTTCCAGTCCATAAGCAGGTCAGCTTCGGA 26467 ||||| ||| | || ||||| ||| ||| |||||| | || || |||||| Sbjct 199810 ACAGGCTTCCTTTCTGGCATGACAAAGTCGTCCGAAGTCCAAAGACAAGTTTTCTTCGGG 199869 Query 26468 TATGAATCGCG-GGCGTTGATGTATTCAGGGAAGAGCGGGTGTACGTCATCCTCTGGCAG 26526 || | |||||| |||| || || ||||| |||||| |||||| ||| || || Sbjct 199870 TAAGCATCGCGCGGCGCA-ATATACATCGGGAACCAGGGGTGTGCGTCATTCTCAGGAAG 199928 Query 26527 ATATCCGCCATACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCACTGGGTG--GAA 26584 ||| |||||||||||||| || | || | |||||| | ||| ||||| || || || Sbjct 199929 ATAGCCGCCATACTCCCAGGGATTGAAAGTGTGGTCAGCCTTTCGCCA--GGCTGATGAC 199986 Query 26585 AGCACGCTGCGCGGATTCTCAATCATATATGGCACTTCGAAGAAATCACCCAGGTAAGCT 26644 || ||||| |||||||||||| || || | ||| | | | |||||| | || || Sbjct 199987 AGGACGCTAACCGGATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGCG 200046 Query 26645 GCGATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGGCAGGGTCGCGGGCGCGTTTGCGC 26704 || ||| |||||| || || || |||||| || || || || |||| Sbjct 200047 GCAATCCGGGCGGTGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGCTTGC-T 200105 Query 26705 GGGAAAG-CTGGCGCACCGCTAACCGCCAGATCCGTACACGGAGGGAATGCGTAAATGAT 26763 || |||| | | ||||| ||||| ||||| || || ||||| ||||| || ||||| Sbjct 200106 GGCAAAGTGTCGAGCACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGAA 200165 Query 26764 ATCCGGCGTGCC 26775 ||||||| |||| Sbjct 200166 ATCCGGCTTGCC 200177 Score = 102 bits (112), Expect = 2e-17 Identities = 249/371 (67%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 26408 ACAGGTTTCTTCTCGGGCATACGGAAGCCGTTTCCAGTCCATAAGCAGGTCAGCTTCGGA 26467 |||||||| |||||||||| || ||| ||||| | || || |||||| Sbjct 48809 ACAGGTTTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGG 48868 Query 26468 TATGAATCGCG-GGCGTTGATGTATTCAGGGAAGAGCGGGTGTACGTCATCCTCTGGCAG 26526 || | |||||| |||| || || ||||| ||||| |||||||||| || || Sbjct 48869 TAAGCATCGCGCGGCGCA-ATATACATCGGGAACCAGGGGTGCGCGTCATCCTCAGGAAG 48927 Query 26527 ATATCCGCCATACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCACTGGGTGGAAAG 26586 ||| ||||| |||||||| || | || ||||| | || || | |||| | || || Sbjct 48928 ATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAG 48987 Query 26587 CACGCTGCGCGGATTCTCAATCATATATGGCACTTCGAAGAAATCACCCAGGTAAGCTGC 26646 ||||| |||||||||||| || || | ||| | | ||||| | || || || Sbjct 48988 GACGCTCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGC 49047 Query 26647 GATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGGCAGGGTCGCGGGCGCGTTTGCGCGG 26706 ||| |||||| || ||||| |||||| || || || | || || | || Sbjct 49048 TATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTAC-TGG 49106 Query 26707 GAAAGCTG--GCGCACCGCTAACCGCCAGATCCGTACACGGAGGGAATGCGTAAATGATA 26764 |||| || | ||||| ||||| ||||| || || || |||||||| || ||| | | Sbjct 49107 CAAAG-TGACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAA 49165 Query 26765 TCCGGCGTGCC 26775 |||||| |||| Sbjct 49166 TCCGGCTTGCC 49176 Score = 102 bits (112), Expect = 2e-17 Identities = 249/371 (67%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 26408 ACAGGTTTCTTCTCGGGCATACGGAAGCCGTTTCCAGTCCATAAGCAGGTCAGCTTCGGA 26467 |||||||| |||||||||| || ||| ||||| | || || |||||| Sbjct 99145 ACAGGTTTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGG 99204 Query 26468 TATGAATCGCG-GGCGTTGATGTATTCAGGGAAGAGCGGGTGTACGTCATCCTCTGGCAG 26526 || | |||||| |||| || || ||||| ||||| |||||||||| || || Sbjct 99205 TAAGCATCGCGCGGCGCA-ATATACATCGGGAACCAGGGGTGCGCGTCATCCTCAGGAAG 99263 Query 26527 ATATCCGCCATACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCACTGGGTGGAAAG 26586 ||| ||||| |||||||| || | || ||||| | || || | |||| | || || Sbjct 99264 ATAGCCGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAG 99323 Query 26587 CACGCTGCGCGGATTCTCAATCATATATGGCACTTCGAAGAAATCACCCAGGTAAGCTGC 26646 ||||| |||||||||||| || || | ||| | | ||||| | || || || Sbjct 99324 GACGCTCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGC 99383 Query 26647 GATCTTCGCGGTGCGCACCGCCTTAAGCTGGAAGGCAGGGTCGCGGGCGCGTTTGCGCGG 26706 ||| |||||| || ||||| |||||| || || || | || || | || Sbjct 99384 TATCCGAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTAC-TGG 99442 Query 26707 GAAAGCTG--GCGCACCGCTAACCGCCAGATCCGTACACGGAGGGAATGCGTAAATGATA 26764 |||| || | ||||| ||||| ||||| || || || |||||||| || ||| | | Sbjct 99443 CAAAG-TGACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAA 99501 Query 26765 TCCGGCGTGCC 26775 |||||| |||| Sbjct 99502 TCCGGCTTGCC 99512 Score = 84.2 bits (92), Expect = 6e-12 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 38755 ATGAAAACCGAAATGGTTGATAAGCACGAAATCAAGATCGGAGATACGGTAGTCCACAAC 38814 |||||||| || | || |||| |||||||||||||| ||||| || | |||||| Sbjct 199421 ATGAAAACGAAATTAGTGCATAAATCAGAAATCAAGATCGGCGATACTGTGATTCACAAC 199362 Query 38815 GGGGAGCTTCGCACTGTGTGCAAGCGAG-CGTTTAGCATCGATGAATTTATGGGCCTGCT 38873 || || ||| ||||| | ||| ||| || | | || ||||||||||||||| ||| | Sbjct 199361 GGAGAACTTAAAACTGTTGGTAAG-GAGTCGATAACCAACGATGAATTTATGGGTCTGTT 199303 Query 38874 ACTTTGGGGCGACAGCTACCGTTTAGGGTATAAACTGGTTGAG 38916 | | |||||| || || | || |||||| |||||||| Sbjct 199302 GTTGTTCGGCGACTCATATCGCCTGGGTTATAAAATGGTTGAG 199260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139845976322052