Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq687 98.7 8e-16 seq59 98.7 8e-16 seq15 82.4 6e-11 >seq687 Length=229775 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || |||||||||||| ||| ||| ||| Sbjct 53572 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 53631 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| ||||| | ||| ||| ||| Sbjct 53632 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 53691 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | |||||||||||||| || | || ||| | || | || || || ||| Sbjct 53692 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGGACACTTGCTGACTACAAC 53751 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || ||||||||| |||| Sbjct 53752 ATTCAAAAGGAGTCCACTCTGCACTTGGT 53780 >seq59 Length=1152742 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || |||||||||||| ||| ||| ||| Sbjct 731053 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 731112 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| ||||| | ||| ||| ||| Sbjct 731113 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 731172 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | |||||||||||||| || | || ||| | || | || || || ||| Sbjct 731173 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGGACACTTGCTGACTACAAC 731232 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || ||||||||| |||| Sbjct 731233 ATTCAAAAGGAGTCCACTCTGCACTTGGT 731261 >seq15 Length=1624393 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || ||||| ||| || || Sbjct 1075515 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACTCTGGAAGTCGAGAGCTCG 1075456 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || ||| || || |||||| | ||| || || Sbjct 1075455 GACACTATTGACAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGACCAG 1075396 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || || || ||||| ||| ||| | ||||||||||| Sbjct 1075395 CAGAGGCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACCCTAGCCGATTATAAT 1075336 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || || || ||| |||| | ||||| ||||||| || Sbjct 1075335 ATTCAGAAAGAGTCGACCCTCCACTTGGTTCTGCGATTAAGAGGAGGTAT 1075286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393487156978