Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1136 93.3 5e-14 seq222 87.8 2e-12 >seq1136 Length=104545 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391 |||||| |||||| || ||||| || ||||| || || | || || ||||| ||| Sbjct 34004 GACGACGTGTACATTCTCGACGCGGCGGAGGAGGCCGGGATTGACCTGCCCTACTCCTGC 34063 Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451 | ||||| |||| || ||||| || || ||| |||| ||| || || || Sbjct 34064 AGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAAGTCGTGAGTGGGGGTGTGGATCAGTCG 34123 Query 158452 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 158511 |||||| ||| ||||| ||||| || || ||| ||| ||| | || |||||||| || Sbjct 34124 GACCAGAGCTTTCTGGATGATGAGCAGATTGATGGTGGATTCGTGCTCACTTGTGTGGCT 34183 Query 158512 TATCCTACAAGTGATTGTGTGA-TTGAGACTGACAAGGAAGAGGAACT 158558 ||||| | ||| || | ||||||| ||||||||||||| || Sbjct 34184 TATCCGTCGTCTGAC-GTCACACTTGAGACCCACAAGGAAGAGGAGCT 34230 >seq222 Length=596275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 161503 GAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 161562 |||||||| ||||| || || || | |||||||| || || ||||| ||| | ||| Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828 Query 161563 TACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTC 161622 ||||| ||||| |||| || || || || || | |||| || ||||| ||| ||| Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888 Query 161623 AACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTG 161660 || || | || || | ||||||||||| ||| |||| Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTTG 106926 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 161503 GAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 161562 |||||||| ||||| || || || | |||||||| || || ||||| ||| | ||| Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783 Query 161563 TACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTC 161622 ||||| ||||| |||| || || || || || | |||| || ||||| ||| ||| Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723 Query 161623 AACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTG 161660 || || | || || | ||||||||||| ||| |||| Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGCTTCTTG 179685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547732260195120