Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq146 87.8 2e-12 >seq3 Length=3914344 Score = 122 bits (134), Expect = 1e-22 Identities = 184/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| || | ||||||||||| || || || Sbjct 1733456 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTCCGGATATGCTGCTCCCTTGTCTGC 1733515 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | ||||| || ||| | ||| |||| || ||| | |||||| | Sbjct 1733516 ATCGCCATACGCAACGCAGGCTTCCCTGAGGAGTCAACACTAAC--ACCGATAATTCTCC 1733573 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | ||||| |||| | || || || | ||| || |||||||||||||| | Sbjct 1733574 CTGGCATCATCCTCTTGTACTCTTGTGAGGTGGCGAGGAAAGCCGCATGAGGACCTCCAT 1733633 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCAC 139554 | ||||| |||| ||||||||| ||| | ||| ||| ||||||| || |||||| Sbjct 1733634 ACCCCATTGGAACACCAAACCTCTGCGCAGAACCAACAACAATATCCGCCCCAAACTCAC 1733693 Query 139555 CTACAGGTTGCATTAACAC 139573 |||| || ||||||| Sbjct 1733694 ---CAGGCGGCTTTAACAC 1733709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||| || |||||||| |||||||| || ||||| || || Sbjct 1731340 ACACCAATAGGACCCATGCCAGGGCCACCACCTCCGTGTGGAATGCAAAATGTTTTGTGA 1731399 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || || || || ||| || ||| ||| ||||| ||||| Sbjct 1731400 AGATTGAGATGGCAAACGTCAGCTCCAATCCAACCTGGGCTTGTCAGACCAACCTG 1731455 >seq146 Length=786261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 123767 GTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGCA 123826 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| ||| Sbjct 94733 GTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATATGCA 94792 Query 123827 CAAGGCAGAAGTAAAAGACCAGACC-ATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 ||||| | ||||| || ||||||| | |||| || || || || || ||| |||||| Sbjct 94793 CAAGGAAAGAGTAATAGGCCAGACCAACCCTACAAAAACGAAGCGGTCCCTCCGTAACCA 94852 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 94853 GTCATCCATAATATCAAA 94870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578982607818640