Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq269 100 4e-16 seq222 91.5 2e-13 seq157 89.7 7e-13 >seq269 Length=538530 Score = 100 bits (110), Expect = 4e-16 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 46995 ACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTAGGCATCAAA 47054 ||||||||| |||| ||| ||| || |||| || ||||| | || || |||||| | Sbjct 485315 ACATGCGAATTTTCAGGGTGAAAGTTGTCATGCGGCCCATACAAATTGGTGGGCATCCCA 485256 Query 47055 GAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATACCAGCAATC 47114 || || |||| | | ||||| | || ||||| ||||||||||| || || ||| Sbjct 485255 GAAATTGCATCCCAACTGTACTGAATCCGATACGCCTGGCACATCTTGATCCCGGCGATC 485196 Query 47115 TTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGAT--ATTCTT 47172 || ||||| || || | || || |||| || || || || ||| | || ||| | Sbjct 485195 TTGGCAATGGCGTACCACTCGTTGGTAGGCTCCAGTGGTCCCGTCAGCA-ATGCGTTC-T 485138 Query 47173 CCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAATAAAAGTT 47232 || || || || | ||||| || ||||||||||| || |||||||| || || | Sbjct 485137 CCGGGATGGGCTGAGGAGCGAATTTGGGGTAAATGCAGGAGGAGCCAAGAAACAAGAGCT 485078 Query 47233 TCTTAACACCAAA 47245 |||| || ||||| Sbjct 485077 TCTTGACTCCAAA 485065 >seq222 Length=596275 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 26937 AGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACG 26996 ||| ||||||||||| || ||||| | || ||||| ||||||||| |||||||| | Sbjct 106921 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 106862 Query 26997 ACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATA 27056 || || || ||||| | || ||||| |||||||| | ||| ||||| || || || || Sbjct 106861 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 106802 Query 27057 ACC 27059 ||| Sbjct 106801 ACC 106799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 26937 AGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACG 26996 ||| ||||||||||| || ||||| | || ||||| ||||||||| |||||||| | Sbjct 179690 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 179749 Query 26997 ACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATA 27056 || || || ||||| | || ||||| |||||||| | ||| ||||| || || || || Sbjct 179750 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 179809 Query 27057 ACC 27059 ||| Sbjct 179810 ACC 179812 >seq157 Length=750868 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 23771 ATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCC 23830 ||||||| | | |||| || |||||| | ||||||||||| | | || || | || Sbjct 399339 ATCTTCAAATAAAGTATCTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCAACGCC 399280 Query 23831 CAGTATAC--CAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCC 23888 | || || || |||||||||||||||| || | ||| | || || |||||||| || Sbjct 399279 C--TACACTTCAACAACTCCCATCATATGAAATGAGTTCAATGTTCAATTATGAAACCCT 399222 Query 23889 TGGAGGAAGAGA-AGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCA 23947 |||| || | | | ||| | || || || || ||||| ||| | ||| |||||||||| Sbjct 399221 TGGAAAAAAAAAGATGAATCAAAATATAGCTGCTACACCAAAATTGGGCACAAAGAACCA 399162 Query 23948 AGATGACTG 23956 | ||||| Sbjct 399161 ACTAGACTG 399153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665476248640240