Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq269 100 4e-16
seq222 91.5 2e-13
seq157 89.7 7e-13
>seq269
Length=538530
Score = 100 bits (110), Expect = 4e-16
Identities = 176/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 46995 ACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTAGGCATCAAA 47054
||||||||| |||| ||| ||| || |||| || ||||| | || || |||||| |
Sbjct 485315 ACATGCGAATTTTCAGGGTGAAAGTTGTCATGCGGCCCATACAAATTGGTGGGCATCCCA 485256
Query 47055 GAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATACCAGCAATC 47114
|| || |||| | | ||||| | || ||||| ||||||||||| || || |||
Sbjct 485255 GAAATTGCATCCCAACTGTACTGAATCCGATACGCCTGGCACATCTTGATCCCGGCGATC 485196
Query 47115 TTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGAT--ATTCTT 47172
|| ||||| || || | || || |||| || || || || ||| | || ||| |
Sbjct 485195 TTGGCAATGGCGTACCACTCGTTGGTAGGCTCCAGTGGTCCCGTCAGCA-ATGCGTTC-T 485138
Query 47173 CCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAATAAAAGTT 47232
|| || || || | ||||| || ||||||||||| || |||||||| || || |
Sbjct 485137 CCGGGATGGGCTGAGGAGCGAATTTGGGGTAAATGCAGGAGGAGCCAAGAAACAAGAGCT 485078
Query 47233 TCTTAACACCAAA 47245
|||| || |||||
Sbjct 485077 TCTTGACTCCAAA 485065
>seq222
Length=596275
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 26937 AGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACG 26996
||| ||||||||||| || ||||| | || ||||| ||||||||| |||||||| |
Sbjct 106921 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 106862
Query 26997 ACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATA 27056
|| || || ||||| | || ||||| |||||||| | ||| ||||| || || || ||
Sbjct 106861 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 106802
Query 27057 ACC 27059
|||
Sbjct 106801 ACC 106799
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 26937 AGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACG 26996
||| ||||||||||| || ||||| | || ||||| ||||||||| |||||||| |
Sbjct 179690 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 179749
Query 26997 ACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATA 27056
|| || || ||||| | || ||||| |||||||| | ||| ||||| || || || ||
Sbjct 179750 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 179809
Query 27057 ACC 27059
|||
Sbjct 179810 ACC 179812
>seq157
Length=750868
Score = 89.7 bits (98), Expect = 7e-13
Identities = 135/189 (71%), Gaps = 5/189 (3%)
Strand=Plus/Minus
Query 23771 ATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCC 23830
||||||| | | |||| || |||||| | ||||||||||| | | || || | ||
Sbjct 399339 ATCTTCAAATAAAGTATCTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCAACGCC 399280
Query 23831 CAGTATAC--CAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCC 23888
| || || || |||||||||||||||| || | ||| | || || |||||||| ||
Sbjct 399279 C--TACACTTCAACAACTCCCATCATATGAAATGAGTTCAATGTTCAATTATGAAACCCT 399222
Query 23889 TGGAGGAAGAGA-AGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCA 23947
|||| || | | | ||| | || || || || ||||| ||| | ||| ||||||||||
Sbjct 399221 TGGAAAAAAAAAGATGAATCAAAATATAGCTGCTACACCAAAATTGGGCACAAAGAACCA 399162
Query 23948 AGATGACTG 23956
| |||||
Sbjct 399161 ACTAGACTG 399153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665476248640240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |