Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 seq12 96.9 4e-15 seq340 95.1 1e-14 seq122 91.5 2e-13 seq283 86.0 7e-12 >seq8 Length=1797525 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||| | || ||||||||| |||| || ||||||| | || || | || | Sbjct 9812 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAG 9871 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | |||| | |||||| || || ||||| | ||| |||| | | || || Sbjct 9872 GTTCAA-GGCAAGGTTGTGGAAAGACCTCAACACATGCTAATGAGGGTTTCTGTTGGGAT 9930 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || ||||||||||| | ||||||| || |||||| || | ||| Sbjct 9931 TCACAAGGACGATATTGATTCTGTTATCAAGACATATCACCTGATGTCTCAGCGGTGGTT 9990 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || ||| || | || |||||||||||| |||| || ||||| || ||| Sbjct 9991 CACTCATGCTTCTCCCACCCTCTTCAATTCTGGAACTCCAAGGCCTCAG 10039 >seq12 Length=1676446 Score = 96.9 bits (106), Expect = 4e-15 Identities = 215/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||| ||||| ||| ||| | | |||| || ||||| || |||||||| Sbjct 85745 GGTGCCAAAATCCCAAAAGGATGTCTTTTGGTGGGTCCACCTGGTACCGGCAAGACCCTT 85686 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| | || || || | ||| || || |||| | || | | Sbjct 85685 CTGGCTCGCGCCGTGGCCGGAGAGGCTGGGACCCCGTTTTTCTCGTGCGCGGCTTCCGAG 85626 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||| ||||||| || ||||| || || || || || | || || | ||| Sbjct 85625 TTCGTGGAGTTGTTTGTGGGAGTGGGGGCGTCGAGAGTGCGGGACTTGTTCGAGAAGGCC 85566 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | ||| | || || ||||| ||||| |||||||| ||||||||||| | ||| | Sbjct 85565 AAGTCGAAAGCG-CCGTGCATTGTGTTCATCGATGAGATAGATGCGGTGGGGAGGCAGAG 85507 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 |||| || ||| || | ||||| ||||| || || || |||||||| || || Sbjct 85506 AGGCGCGGGGATGGGCGGCGGG--AATGATGAGAGGGAGCAGACTATTAATCAGCTGCTG 85449 Query 175573 ACCGAGATGGATGGCTTT 175590 || ||||||||||| ||| Sbjct 85448 ACGGAGATGGATGGGTTT 85431 >seq340 Length=460696 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || |||||| | ||| ||||| Sbjct 356840 CCAGGAACCGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTT 356781 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | | | ||||| || ||||||||||| || ||||| | | Sbjct 356780 TTCTCCATT--TCAGGTTCTGAATTTGTTGAAATGTTTGTTGGGGTTGGTGCTTCCCGAG 356723 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 |||| ||||| ||| | | ||| || ||| ||| || ||||| || ||||||| | Sbjct 356722 TTCGTGATCTTTTTAAGAAGGCCAAGGAGAATGCACCTTGCATTGTATTTGTTGATGAAA 356663 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAG 175549 |||| || || || |||| | | |||| |||| || || || || || | Sbjct 356662 TTGACGCTGTTGGACGGCAAAGAGGAACTGGAATTGGT---GGAGGGAACGATGAAAGGG 356606 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 ||||||| ||||||| || | || || |||||||| ||||| | ||||| ||| Sbjct 356605 AACAAACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAAGGCAACACTGGTATTA 356546 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | || |||| || ||||| | | ||||| ||||| Sbjct 356545 TCGTGGTTGCAGCGACTAACAGGGCAGATATTCTTGA 356509 >seq122 Length=845292 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || || || || || |||||| | ||| ||||| Sbjct 635539 CCGGGAACCGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCTGGTGTTCCATTT 635598 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | ||| Sbjct 635599 TTCTCCATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCCCGAGTT 635658 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | ||| || ||| ||| || ||||| || ||||||| ||| Sbjct 635659 CGTGATCTTTTTAAGAAGGCCAAGGAGAATGCACCTTGCATTGTATTTGTTGATGAAATT 635718 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 || || || || |||| | | |||| |||| || || || || || ||| Sbjct 635719 GACGCTGTTGGACGGCAAAGAGGAACTGGAATTGGT---GGAGGGAACGATGAAAGGGAA 635775 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 ||||| ||||||| || | || || |||||||| ||||| | ||||| || | Sbjct 635776 CAAACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGCAACACTGGTATCATC 635835 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || |||| || ||||| | | ||||| ||||| Sbjct 635836 GTGGTTGCAGCGACTAACAGGGCAGATATTCTTGA 635870 >seq283 Length=528073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 175229 AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-GAAGTGGTGCCAAGA-T 175286 |||||||||| || || || || ||||| ||| | |||| | ||| | ||||| | Sbjct 125469 AAGAGATTGTTGAATTCCTGAA--AACCCCAGAAAAGTTTTCTGCAGTTGGAGCAAGAAT 125412 Query 175287 CCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGC 175346 ||| ||| | ||||| | ||| ||| || || |||||||| || || ||| || Sbjct 125411 TCCCAAAGGGGTACTTCTTGTGGGGCCGCCGGGGACCGGAAAGACACTGCTGGCCAAGGC 125352 Query 175347 CATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGA 175405 ||| || |||||| | || || ||| || | || || | || | || | |||| Sbjct 125351 CATTGCAGGTGAAGCGGGGGTGCCTTTCTTCTCTCTG-TCAGGGTCAGAGTTCATTGAGA 125293 Query 175406 TGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATC 175465 ||||||| || || || || |||||| | ||| | || | | || | ||| Sbjct 125292 TGTTTGTGGGAGTAGGAGCTTCTAGGGTTAGAGATTTGTTCAACAAGGCGAAGGCGAATT 125233 Query 175466 AACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG-- 175523 || || | || |||||||| ||||| ||||| ||||| | ||| | || | || Sbjct 125232 CTCCGTGCCTGGTTTTCATTGACGAGATAGATGCTGTGGGGAGGCAGAGAGGCACAGGAA 125173 Query 175524 TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGA 175583 | | || | |||||| ||||| || ||||| | ||||| || ||||| || ||||| Sbjct 125172 TCGGCGGC--GGAAATGATGAGAGGGAGCAAACCCTGAATCAGCTGCTCACTGAAATGGA 125115 Query 175584 TGGCTTT 175590 ||| ||| Sbjct 125114 TGGGTTT 125108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553328564160