Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq222 86.0 8e-12 >seq222 Length=596275 Score = 86.0 bits (94), Expect = 8e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 8094 AGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATC 8152 ||| ||||||||||| | | | || || || |||| | ||||| || ||||| |||| Sbjct 106921 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTA-GCATATTGAAAGATCAATC 106863 Query 8153 TACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTAT 8212 ||||| || |||||| |||| || ||||| ||||| | ||| ||||| ||||| || | Sbjct 106862 AGCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGT 106803 Query 8213 AACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 |||| | || ||| || | ||| || || || | |||| Sbjct 106802 AACCTTCATTGGTAGATTCATTTTCTGTGGTTTCCCAGATT 106762 Score = 86.0 bits (94), Expect = 8e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 8094 AGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATC 8152 ||| ||||||||||| | | | || || || |||| | ||||| || ||||| |||| Sbjct 179690 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTA-GCATATTGAAAGATCAATC 179748 Query 8153 TACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTAT 8212 ||||| || |||||| |||| || ||||| ||||| | ||| ||||| ||||| || | Sbjct 179749 AGCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGT 179808 Query 8213 AACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 |||| | || ||| || | ||| || || || | |||| Sbjct 179809 AACCTTCATTGGTAGATTCATTTTCTGTGGTTTCCCAGATT 179849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615845602353040