Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq222 93.3 1e-14
seq435 84.2 6e-12
>seq222
Length=596275
Score = 93.3 bits (102), Expect = 1e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26075 CAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATT 26134
|||| ||| || ||||| || | |||||| | ||||| ||||| ||||| ||||| ||
Sbjct 106926 CAAGAAGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATC 106867
Query 26135 AATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAAC 26194
|||| ||||| || || || |||| || ||||| || || | ||| |||||||||||
Sbjct 106866 AATCAGCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAAT 106807
Query 26195 TTATAGCCATAATT 26208
|| || || | |||
Sbjct 106806 TTGTAACCTTCATT 106793
Score = 93.3 bits (102), Expect = 1e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 26075 CAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATT 26134
|||| ||| || ||||| || | |||||| | ||||| ||||| ||||| ||||| ||
Sbjct 179685 CAAGAAGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATC 179744
Query 26135 AATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAAC 26194
|||| ||||| || || || |||| || ||||| || || | ||| |||||||||||
Sbjct 179745 AATCAGCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAAT 179804
Query 26195 TTATAGCCATAATT 26208
|| || || | |||
Sbjct 179805 TTGTAACCTTCATT 179818
>seq435
Length=389137
Score = 84.2 bits (92), Expect = 6e-12
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26075 CAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATT 26134
|||| ||| || ||||| | | |||||| | ||||| ||||| ||||| |||||||||
Sbjct 3205 CAAGAAGCTAGGAAGAAGTCTAAAGAACGACAATTATTGAAACTAGCATATTGAAAAATT 3146
Query 26135 AATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAAC 26194
||| ||||| || || || |||| || |||| || | ||||| |||||||| ||
Sbjct 3145 AATAAGCCAAAATAACCATGAACAGCTACGATATAGTAGATTTCTTCCTCTTGCCCGAAT 3086
Query 26195 TTATAGCCATAATT 26208
|| || || | |||
Sbjct 3085 TTGTAACCTTCATT 3072
Score = 84.2 bits (92), Expect = 6e-12
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 26075 CAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATT 26134
|||| ||| || ||||| | | |||||| | ||||| ||||| ||||| |||||||||
Sbjct 109134 CAAGAAGCTAGGAAGAAGTCTAAAGAACGACAATTATTGAAACTAGCATATTGAAAAATT 109193
Query 26135 AATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAAC 26194
||| ||||| || || || |||| || |||| || | ||||| |||||||| ||
Sbjct 109194 AATAAGCCAAAATAACCATGAACAGCTACGATATAGTAGATTTCTTCCTCTTGCCCGAAT 109253
Query 26195 TTATAGCCATAATT 26208
|| || || | |||
Sbjct 109254 TTGTAACCTTCATT 109267
Score = 84.2 bits (92), Expect = 6e-12
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26075 CAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATT 26134
|||| ||| || ||||| | | |||||| | ||||| ||||| ||||| |||||||||
Sbjct 171570 CAAGAAGCTAGGAAGAAGTCTAAAGAACGACAATTATTGAAACTAGCATATTGAAAAATT 171511
Query 26135 AATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAAC 26194
||| ||||| || || || |||| || |||| || | ||||| |||||||| ||
Sbjct 171510 AATAAGCCAAAATAACCATGAACAGCTACGATATAGTAGATTTCTTCCTCTTGCCCGAAT 171451
Query 26195 TTATAGCCATAATT 26208
|| || || | |||
Sbjct 171450 TTGTAACCTTCATT 171437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147708172597440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |