Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq222 84.2 6e-12 >seq222 Length=596275 Score = 84.2 bits (92), Expect = 6e-12 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||| | | || |||||||||| | ||| | ||| ||||| |||||||||||| || | Sbjct 106925 AAGAAGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCA 106866 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || |||||||||| || || || | | || || ||||| | Sbjct 106865 ATCAGCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATT 106806 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC 40890 | || || | || |||||| |||| ||||| |||| Sbjct 106805 TGTAACCTTCATTGGTAGATTCATTTTCTGTGGTTTCCC 106767 Score = 84.2 bits (92), Expect = 6e-12 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||| | | || |||||||||| | ||| | ||| ||||| |||||||||||| || | Sbjct 179686 AAGAAGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCA 179745 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || |||||||||| || || || | | || || ||||| | Sbjct 179746 ATCAGCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATT 179805 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC 40890 | || || | || |||||| |||| ||||| |||| Sbjct 179806 TGTAACCTTCATTGGTAGATTCATTTTCTGTGGTTTCCC 179844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698676491188