Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq157 95.1 1e-14 seq222 82.4 9e-11 >seq157 Length=750868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 66928 CTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTAT 66987 ||||||| | || || || | ||| || ||||| |||| ||||||| | | ||||| Sbjct 399381 CTTGAGTTGGGTTAAA-GCATGGAATGTATTTGCACCATCACTATCTTCAAATAAAGTAT 399323 Query 66988 TCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATAC-CTGCTACA 67046 ||||| ||| |||||||||| || | | || ||| | ||| ||| || | ||| Sbjct 399322 CTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCAACGCCC----TACACTTCAACA 399267 Query 67047 ---CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGA-AG 67102 |||||||||||||| | |||||| || || ||||| || ||||| | || | | | Sbjct 399266 ACTCCCATCATATGAAATGAGTTCAATGTTCAATTATGAAACCCTTGGAAAAAAAAAGAT 399207 Query 67103 GAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGA 67157 ||||| ||| || |||| || || ||| || | || |||||||| || ||| Sbjct 399206 GAATCAAAATATAGCTGCTACACCAAAATTGGGCACAAAGAACCAACTAGACTGA 399152 >seq222 Length=596275 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 68046 AGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACG 68105 ||| ||||||||||| | ||||| | || ||||| ||||| || ||||||| | Sbjct 106921 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 106862 Query 68106 ACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTA 68165 || || || ||||| |||| || || ||||| || | ||| ||||| || || ||||| Sbjct 106861 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 106802 Query 68166 ACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| | || || ||| |||| |||||||| Sbjct 106801 ACCTTCATTGGTAGATTCATTTTCTGTGGTTTC 106769 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 68046 AGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACG 68105 ||| ||||||||||| | ||||| | || ||||| ||||| || ||||||| | Sbjct 179690 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 179749 Query 68106 ACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTA 68165 || || || ||||| |||| || || ||||| || | ||| ||||| || || ||||| Sbjct 179750 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 179809 Query 68166 ACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| | || || ||| |||| |||||||| Sbjct 179810 ACCTTCATTGGTAGATTCATTTTCTGTGGTTTC 179842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572038797216240