Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq157 95.1 1e-14
seq222 82.4 9e-11
>seq157
Length=750868
Score = 95.1 bits (104), Expect = 1e-14
Identities = 165/235 (70%), Gaps = 10/235 (4%)
Strand=Plus/Minus
Query 66928 CTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTAT 66987
||||||| | || || || | ||| || ||||| |||| ||||||| | | |||||
Sbjct 399381 CTTGAGTTGGGTTAAA-GCATGGAATGTATTTGCACCATCACTATCTTCAAATAAAGTAT 399323
Query 66988 TCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATAC-CTGCTACA 67046
||||| ||| |||||||||| || | | || ||| | ||| ||| || | |||
Sbjct 399322 CTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCAACGCCC----TACACTTCAACA 399267
Query 67047 ---CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGA-AG 67102
|||||||||||||| | |||||| || || ||||| || ||||| | || | | |
Sbjct 399266 ACTCCCATCATATGAAATGAGTTCAATGTTCAATTATGAAACCCTTGGAAAAAAAAAGAT 399207
Query 67103 GAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGA 67157
||||| ||| || |||| || || ||| || | || |||||||| || |||
Sbjct 399206 GAATCAAAATATAGCTGCTACACCAAAATTGGGCACAAAGAACCAACTAGACTGA 399152
>seq222
Length=596275
Score = 82.4 bits (90), Expect = 9e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 68046 AGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACG 68105
||| ||||||||||| | ||||| | || ||||| ||||| || ||||||| |
Sbjct 106921 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 106862
Query 68106 ACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTA 68165
|| || || ||||| |||| || || ||||| || | ||| ||||| || || |||||
Sbjct 106861 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 106802
Query 68166 ACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198
||| | || || ||| |||| ||||||||
Sbjct 106801 ACCTTCATTGGTAGATTCATTTTCTGTGGTTTC 106769
Score = 82.4 bits (90), Expect = 9e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 68046 AGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACG 68105
||| ||||||||||| | ||||| | || ||||| ||||| || ||||||| |
Sbjct 179690 AGCTAGGAAGAAGTGTAAAGAACGACAATTATTGAAACTAGCATATTGAAAGATCAATCA 179749
Query 68106 ACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTA 68165
|| || || ||||| |||| || || ||||| || | ||| ||||| || || |||||
Sbjct 179750 GCCAAAATAACCATGAACAGCTACGATATTGTAGGTTTTTTCCTCTTGCCCAAATTTGTA 179809
Query 68166 ACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198
||| | || || ||| |||| ||||||||
Sbjct 179810 ACCTTCATTGGTAGATTCATTTTCTGTGGTTTC 179842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572038797216240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |