Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq15 127 4e-24 >seq15 Length=1624393 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| ||||| || |||| || | || | |||||| ||||||||| ||| Sbjct 1075286 ATACCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCG 1075345 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || || || ||||||||||| || | ||||| || || || Sbjct 1075346 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1075405 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || |||| || | || |||||| || || ||| Sbjct 1075406 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCG 1075465 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||||||||||||| |||| ||||| || | ||| || || || |||||| Sbjct 1057839 ATACCGCCTCTCAATCGAAGAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCG 1057898 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | || || ||||| || ||||| || || | ||||| || || ||| Sbjct 1057899 GCTAGGGTGCGACCGTCCTCCAATTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGA 1057958 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || |||| || | || || |||||||| ||| Sbjct 1057959 GGAATCCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGAGCTCTCG 1058018 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 1058019 ACCTCCAAAGTTATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1058068 Score = 102 bits (112), Expect = 1e-16 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| |||||| |||| ||||| || | ||| || || || || || Sbjct 1057610 ATACCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 1057669 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC-AGG 193249 | | || || ||| || ||||| || || ||||||||||||||||| || || || Sbjct 1057670 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGG 1057729 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 || ||||| || |||||||| || || | || | || || ||||| ||| || Sbjct 1057730 GGGGATTCCCTCCTTATCTTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAACTTTC 1057789 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || || ||||| ||||| || ||||| Sbjct 1057790 GACCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 1057840 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || |||||||| || | ||||| || || ||||| || || || || Sbjct 1074904 ATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTT 1074963 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | ||| ||||||||||||| ||| || || |||||||| Sbjct 1074964 GTCCTGAATCTTCGCCTTCACATTGTCAATAGTATCGGAACTCTCTACCTCCAGAGTTAT 1075023 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| Sbjct 1075024 GGTCTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 1075059 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || || ||||||||||| | ||||| ||||| ||||| || || || || Sbjct 1057456 ATCCTCCAACTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCTGGAGGAATGCCCTCCTT 1057515 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | || | || || ||||| ||| ||| || || ||||| || Sbjct 1057516 GTCTTGAATCTTCGCCTTCACGTTATCTATGGTATCTGAACTCTCCACCTCCAGAGTGAT 1057575 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || || ||||| || ||||| Sbjct 1057576 AGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 1057611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899629861926240