Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq15 127 4e-24
>seq15
Length=1624393
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| ||||| ||||| || |||| || | || | |||||| ||||||||| |||
Sbjct 1075286 ATACCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCG 1075345
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| ||| || || || ||||||||||| || | ||||| || || ||
Sbjct 1075346 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1075405
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || |||||||| || |||| || | || |||||| || || |||
Sbjct 1075406 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCG 1075465
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || || ||||| ||||| || || || |||||
Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| |||||||||||||| |||| ||||| || | ||| || || || ||||||
Sbjct 1057839 ATACCGCCTCTCAATCGAAGAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCG 1057898
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || | | || || ||||| || ||||| || || | ||||| || || |||
Sbjct 1057899 GCTAGGGTGCGACCGTCCTCCAATTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGA 1057958
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || |||| || | || || |||||||| |||
Sbjct 1057959 GGAATCCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGAGCTCTCG 1058018
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | |||||| || || || ||||| ||||| || || || |||||
Sbjct 1058019 ACCTCCAAAGTTATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1058068
Score = 102 bits (112), Expect = 1e-16
Identities = 162/231 (70%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| |||| |||||| |||| ||||| || | ||| || || || || ||
Sbjct 1057610 ATACCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 1057669
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC-AGG 193249
| | || || ||| || ||||| || || ||||||||||||||||| || || ||
Sbjct 1057670 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGG 1057729
Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309
|| ||||| || |||||||| || || | || | || || ||||| ||| ||
Sbjct 1057730 GGGGATTCCCTCCTTATCTTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAACTTTC 1057789
Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | ||| || || || || || || ||||| ||||| || |||||
Sbjct 1057790 GACCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 1057840
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || ||||| || |||||||| || | ||||| || || ||||| || || || ||
Sbjct 1074904 ATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTT 1074963
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| || || || | || | ||| ||||||||||||| ||| || || ||||||||
Sbjct 1074964 GTCCTGAATCTTCGCCTTCACATTGTCAATAGTATCGGAACTCTCTACCTCCAGAGTTAT 1075023
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || || || |||||
Sbjct 1075024 GGTCTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 1075059
Score = 84.2 bits (92), Expect = 4e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || || || || ||||||||||| | ||||| ||||| ||||| || || || ||
Sbjct 1057456 ATCCTCCAACTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCTGGAGGAATGCCCTCCTT 1057515
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||||| || || | || | || || ||||| ||| ||| || || ||||| ||
Sbjct 1057516 GTCTTGAATCTTCGCCTTCACGTTATCTATGGTATCTGAACTCTCCACCTCCAGAGTGAT 1057575
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || || || || || ||||| || |||||
Sbjct 1057576 AGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 1057611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899629861926240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |