Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq687 114 2e-20
seq59 114 2e-20
seq15 96.9 5e-15
seq615 95.1 2e-14
>seq687
Length=229775
Score = 114 bits (126), Expect = 2e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || |||||||| ||||| ||||| | ||||| ||| ||||
Sbjct 53572 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 53631
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| ||||| || || || || ||||| || ||||| |||
Sbjct 53632 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 53691
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
||||| ||||| | ||| || ||||||||||| |||
Sbjct 53692 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGAT 53727
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || ||||||||||| || || || ||||| ||||| || ||||
Sbjct 53800 ATGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATAACATTGGAAGTAGAGAGTTCT 53859
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || || || || || || ||||| ||||| || ||
Sbjct 53860 GATACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 53919
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| || | || | ||||||||||||||| || ||
Sbjct 53920 CAGAGGCTCATCTTTGCCGGTAAGCAGCTGGAGGA 53954
>seq59
Length=1152742
Score = 114 bits (126), Expect = 2e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || |||||||| ||||| ||||| | ||||| ||| ||||
Sbjct 731053 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 731112
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| ||||| || || || || ||||| || ||||| |||
Sbjct 731113 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 731172
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
||||| ||||| | ||| || ||||||||||| |||
Sbjct 731173 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGAT 731208
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || ||||||||||| || || || ||||| ||||| || ||||
Sbjct 731281 ATGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATAACATTGGAAGTAGAGAGTTCT 731340
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || || || || || || ||||| ||||| || ||
Sbjct 731341 GATACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 731400
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| || | || | ||||||||||||||| || ||
Sbjct 731401 CAGAGGCTCATCTTTGCCGGTAAGCAGCTGGAGGA 731435
>seq15
Length=1624393
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| | || || || || ||||| | |||||||| ||
Sbjct 1075515 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACTCTGGAAGTCGAGAGCTCG 1075456
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| || || || |||||||| || || || || || || ||
Sbjct 1075455 GACACTATTGACAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGACCAG 1075396
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | |||||| |||||| | || ||| | |||| || | |||||||||
Sbjct 1075395 CAGAGGCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACCCTAGCCGATTATAAT 1075336
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| |||| || || || || | |||||||||| |||
Sbjct 1075335 ATTCAGAAAGAGTCGACCCTCCACTTGGTTCTGCGATTAAGAGGAGGT 1075288
>seq615
Length=266788
Score = 95.1 bits (104), Expect = 2e-14
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972
|| |||||||||||||| ||||| || ||||| |||||||||| ||| |||||||| |
Sbjct 187883 CAGGATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTG 187824
Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025
|||||| | ||||| | ||||||||| | ||||||| ||| | || |||||
Sbjct 187823 GAAGATGGCCGAACTCTTGCAGATTATA--ACATCCAAAAGGAGTCAACACTTCA 187771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731852038191200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |