Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq687 114 2e-20 seq59 114 2e-20 seq15 96.9 5e-15 seq615 95.1 2e-14 >seq687 Length=229775 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| ||||| ||||| | ||||| ||| |||| Sbjct 53572 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 53631 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||||| || || || || ||||| || ||||| ||| Sbjct 53632 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 53691 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||| | ||| || ||||||||||| ||| Sbjct 53692 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGAT 53727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || ||||| ||||| || |||| Sbjct 53800 ATGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATAACATTGGAAGTAGAGAGTTCT 53859 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || || ||||| ||||| || || Sbjct 53860 GATACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 53919 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || | || | ||||||||||||||| || || Sbjct 53920 CAGAGGCTCATCTTTGCCGGTAAGCAGCTGGAGGA 53954 >seq59 Length=1152742 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| ||||| ||||| | ||||| ||| |||| Sbjct 731053 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 731112 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||||| || || || || ||||| || ||||| ||| Sbjct 731113 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 731172 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||| | ||| || ||||||||||| ||| Sbjct 731173 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGAT 731208 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || ||||| ||||| || |||| Sbjct 731281 ATGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATAACATTGGAAGTAGAGAGTTCT 731340 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || || ||||| ||||| || || Sbjct 731341 GATACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 731400 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || | || | ||||||||||||||| || || Sbjct 731401 CAGAGGCTCATCTTTGCCGGTAAGCAGCTGGAGGA 731435 >seq15 Length=1624393 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || || || ||||| | |||||||| || Sbjct 1075515 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACTCTGGAAGTCGAGAGCTCG 1075456 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || |||||||| || || || || || || || Sbjct 1075455 GACACTATTGACAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGACCAG 1075396 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| |||||| | || ||| | |||| || | ||||||||| Sbjct 1075395 CAGAGGCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACCCTAGCCGATTATAAT 1075336 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| |||| || || || || | |||||||||| ||| Sbjct 1075335 ATTCAGAAAGAGTCGACCCTCCACTTGGTTCTGCGATTAAGAGGAGGT 1075288 >seq615 Length=266788 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || |||||||||||||| ||||| || ||||| |||||||||| ||| |||||||| | Sbjct 187883 CAGGATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTG 187824 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025 |||||| | ||||| | ||||||||| | ||||||| ||| | || ||||| Sbjct 187823 GAAGATGGCCGAACTCTTGCAGATTATA--ACATCCAAAAGGAGTCAACACTTCA 187771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731852038191200