Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15 107 4e-18 seq615 96.9 7e-15 seq687 95.1 2e-14 seq59 95.1 2e-14 >seq15 Length=1624393 Score = 107 bits (118), Expect = 4e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || || | || || || ||||| | ||| || ||| || ||||| Sbjct 1057610 ATACCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 1057669 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC-AGG 192425 | | || | |||| |||||||| ||||||||||| ||||||||||| || || || Sbjct 1057670 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGG 1057729 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || ||||| || |||||||| || || || || ||| || | ||| || ||| Sbjct 1057730 GGGGATTCCCTCCTTATCTTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAACTTTC 1057789 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || | ||||| | ||| |||||||| Sbjct 1057790 GACCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 1057840 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || | ||| | |||| ||| || ||| |||||||| | | ||| || Sbjct 1074614 AGACGAAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTATAATCTGCAAGTGTGCGA 1074673 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||||| ||||||||||| | ||||| || || ||||| || ||||| Sbjct 1074674 CCATCCTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCC 1074733 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 ||||| || || ||| ||| ||||| |||| || || || || || || ||| Sbjct 1074734 TTATCCTGGATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGGGTA 1074793 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||||| || || | |||||||||||| Sbjct 1074794 ATTGTTTTCCCAGTTAGGGTCTTCACGAATATCTGCATT 1074832 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || || || | || | |||||| ||||||||||| Sbjct 1075286 ATACCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCG 1075345 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| ||||| || || || |||||||| | ||||| || || || Sbjct 1075346 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1075405 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || || || |||| || || || Sbjct 1075406 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCG 1075465 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || || |||| ||||| | || |||||||| Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || | ||| | |||| |||||| || || ||||| | | || || Sbjct 1057166 AGACGAAGAACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCCGCAAGGGTACGA 1057225 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||||| ||||| ||||| || ||||| || |||||||| || || || Sbjct 1057226 CCATCCTCTAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCC 1057285 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || || ||| ||| ||||| |||| || || || || || ||||| Sbjct 1057286 TTGTCCTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCGAGAGTG 1057345 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || | ||| || | |||||||||||| Sbjct 1057346 ATCGTCTTCCCTGTCAGTGTCTTCACAAATATCTGCAT 1057383 >seq615 Length=266788 Score = 96.9 bits (106), Expect = 7e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| |||||||| ||||||||||| || ||||| Sbjct 187791 GATGTTATAATCTGCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCT 187850 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||||||||| || || ||||||||||| || Sbjct 187851 CTGTTGATCAGGAGGGATGCCTTCTTTATCCTG 187883 >seq687 Length=229775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||||| | || || || | ||| | ||| ||| || || || || || Sbjct 53801 ATCCCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 53743 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||| | | |||| || | || || || |||||||| || || ||||| || || Sbjct 53742 AGCAAGTGTCCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGG 53683 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||||| || |||||| || | ||| || ||| Sbjct 53682 GGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTC 53623 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||||||||| ||||| || || || | ||| || ||||| Sbjct 53622 AACTTCCAGGGTAATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCAT 53572 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | |||| ||| || ||| || || ||| Sbjct 53345 ATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 53286 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || || ||||||||||| | ||||| || || ||| Sbjct 53285 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGT 53226 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || || |||||| || | || || || Sbjct 53225 GGGATACCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTGTCAGAGCTCTCA 53166 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| || || | || |||| |||||| ||||| Sbjct 53165 ACCTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 53116 >seq59 Length=1152742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||||| | || || || | ||| | ||| ||| || || || || || Sbjct 731282 ATCCCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 731224 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||| | | |||| || | || || || |||||||| || || ||||| || || Sbjct 731223 AGCAAGTGTCCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCTTTGTTGGTCTGG 731164 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||||| || |||||| || | ||| || ||| Sbjct 731163 GGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATTGTATCAGAACTTTC 731104 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||||||||| ||||| || || || | ||| || ||||| Sbjct 731103 AACTTCCAGGGTAATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCAT 731053 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | |||| ||| || ||| || || ||| Sbjct 730826 ATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 730767 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || || ||||||||||| | ||||| || || ||| Sbjct 730766 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGT 730707 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || || |||||| || | || || || Sbjct 730706 GGGATACCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTGTCAGAGCTCTCA 730647 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| || || | || |||| |||||| ||||| Sbjct 730646 ACCTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 730597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984452477015700