Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq15 111 3e-19
seq615 95.1 2e-14
seq202 84.2 4e-11
>seq15
Length=1624393
Score = 111 bits (122), Expect = 3e-19
Identities = 164/231 (71%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| || ||||| | || || || ||||| | ||| || || || |||||
Sbjct 1057610 ATACCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 1057669
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC-AGG 171958
| | || | | || |||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1057670 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGG 1057729
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
|| ||||| || |||||||| || || || || ||| || ||||| || |||
Sbjct 1057730 GGGGATTCCCTCCTTATCTTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAACTTTC 1057789
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | |||||| || || || || | ||||| | || ||||||||
Sbjct 1057790 GACCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 1057840
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| ||||| | ||| | || || || | || | |||||| ||||||||||||
Sbjct 1075286 ATACCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCG 1075345
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | ||| | || ||||| || || || ||||| || | ||||| ||||| ||
Sbjct 1075346 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1075405
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| || |||||||| || || || || || ||||| || || ||
Sbjct 1075406 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCG 1075465
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| |||||||| || || || |||| ||||| | ||| ||||||||
Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515
Score = 100 bits (110), Expect = 5e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| |||||||||| | | || | || || | ||||| |||||||| || | |||
Sbjct 1074650 ATGTTATAATCTGCAAGTGTGCGACCATCCTCAAGCTGTTTCCCAGCAAAGATCAGCCTC 1074709
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| ||||| ||||| || ||||| ||||| || || ||| ||| ||||| |||||
Sbjct 1074710 TGCTGGTCCGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTGACATTGTCAATAGTG 1074769
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || || || || ||||| ||||| ||||||| || || | ||||||||||
Sbjct 1074770 TCAGAGCTCTCAACCTCCAGGGTAATTGTTTTCCCAGTTAGGGTCTTCACGAATATCTGC 1074829
Query 172068 ATT 172070
|||
Sbjct 1074830 ATT 1074832
>seq615
Length=266788
Score = 95.1 bits (104), Expect = 2e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| |||||||||| | || ||| | || |||||||| |||||||||||||| ||||||
Sbjct 187792 ATGTTATAATCTGCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTC 187851
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| ||||| || || ||||||||||| ||
Sbjct 187852 TGTTGATCAGGAGGGATGCCTTCTTTATCCTG 187883
>seq202
Length=624202
Score = 84.2 bits (92), Expect = 4e-11
Identities = 122/169 (72%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 39116 ATATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175
||| || ||||| || || || || || || ||||| | || || | || ||
Sbjct 31365 ATACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGA 31424
Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTAC 39234
||||| | ||| |||||||| || | |||||||||||||||||| | ||| ||||| |
Sbjct 31425 GAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCC 31483
Query 39235 TAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCC 39283
|| ||||| || |||||||| || ||||| |||| |||| |||||
Sbjct 31484 CCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTC--GCTCC 31530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905111312415600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |