Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq15 111 3e-19 seq615 95.1 2e-14 seq202 84.2 4e-11 >seq15 Length=1624393 Score = 111 bits (122), Expect = 3e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || ||||| | || || || ||||| | ||| || || || ||||| Sbjct 1057610 ATACCACCCCTCAGTCGAAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 1057669 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC-AGG 171958 | | || | | || |||||||| ||||||||||||||||||||||| ||||| || Sbjct 1057670 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCTGGG 1057729 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || ||||| || |||||||| || || || || ||| || ||||| || ||| Sbjct 1057730 GGGGATTCCCTCCTTATCTTGGATCTTTGCCTTGACGTTATCGATCGTATCAGAACTTTC 1057789 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || | ||||| | || |||||||| Sbjct 1057790 GACCTCCAAAGTAATTGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 1057840 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || || || | || | |||||| |||||||||||| Sbjct 1075286 ATACCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCG 1075345 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 1075346 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1075405 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || || || ||||| || || || Sbjct 1075406 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCG 1075465 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || || || |||| ||||| | ||| |||||||| Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| | | || | || || | ||||| |||||||| || | ||| Sbjct 1074650 ATGTTATAATCTGCAAGTGTGCGACCATCCTCAAGCTGTTTCCCAGCAAAGATCAGCCTC 1074709 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| ||||| || || ||| ||| ||||| ||||| Sbjct 1074710 TGCTGGTCCGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTGACATTGTCAATAGTG 1074769 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || ||||| ||||| ||||||| || || | |||||||||| Sbjct 1074770 TCAGAGCTCTCAACCTCCAGGGTAATTGTTTTCCCAGTTAGGGTCTTCACGAATATCTGC 1074829 Query 172068 ATT 172070 ||| Sbjct 1074830 ATT 1074832 >seq615 Length=266788 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| | || ||| | || |||||||| |||||||||||||| |||||| Sbjct 187792 ATGTTATAATCTGCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTC 187851 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||| || || ||||||||||| || Sbjct 187852 TGTTGATCAGGAGGGATGCCTTCTTTATCCTG 187883 >seq202 Length=624202 Score = 84.2 bits (92), Expect = 4e-11 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 39116 ATATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 ||| || ||||| || || || || || || ||||| | || || | || || Sbjct 31365 ATACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGA 31424 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTAC 39234 ||||| | ||| |||||||| || | |||||||||||||||||| | ||| ||||| | Sbjct 31425 GAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCC 31483 Query 39235 TAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCC 39283 || ||||| || |||||||| || ||||| |||| |||| ||||| Sbjct 31484 CCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCTACGATTC--GCTCC 31530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905111312415600