Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq340 134 4e-26
seq105 116 1e-20
seq450 113 1e-19
seq489 102 2e-16
seq835 93.3 1e-13
seq283 93.3 1e-13
seq246 91.5 4e-13
seq796 86.0 2e-11
seq948 84.2 6e-11
seq571 84.2 6e-11
seq8 84.2 6e-11
>seq340
Length=460696
Score = 134 bits (148), Expect = 4e-26
Identities = 346/517 (67%), Gaps = 20/517 (4%)
Strand=Plus/Plus
Query 288843 CACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTT 288902
|||| ||| ||||||| |||| | ||| || | ||| | ||||| || |||||
Sbjct 356469 CACCTGCCTGTCAAACCGGCCAGGCCTCAATAAGGCAGAGTCAAGAATATCTGCCCTGTT 356528
Query 288903 TGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAA 288960
|| ||||| | || | |||| | | ||| ||| ||| |||||||| ||| |||
Sbjct 356529 AGTCGCTGCAACCACGATAATACCAGT--GTTGCCTTCAAAACCATCCATTTCTGTCAAA 356586
Query 288961 ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GC 289018
| |||||||| ||||||||||||||||| || |||| |||| | || |
Sbjct 356587 AGCTGATTAAGGGTTTGTTCCCTTTCATCGTTC---CCTC------CACCA-ATTCCAGT 356636
Query 289019 TCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTG 289076
|||| ||| |||||||| |||||||| |||| || | | || || | ||| |
Sbjct 356637 TCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTC 356696
Query 289077 TCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136
| || | ||| | || | || ||||| || |||| |||||| ||||||| ||
Sbjct 356697 CTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCAACAAACATTTCAAC 356756
Query 289137 AAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195
|||||||||| | || | | || | |||| ||| ||||| || || | |||| | |
Sbjct 356757 AAATTCAGAACCTGA-AATGGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTG 356815
Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255
| || || ||||| || ||||| || || || | | ||||| || || || | | |
Sbjct 356816 CTAGCAGAGTCTTTCCGGTTCCTGGAGGGCCAACAAGAAGAACCCCTTTAGGAATTCGAG 356875
Query 289256 CCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315
||||| ||| | | ||||||| ||||||| ||||| || | ||| ||| || |
Sbjct 356876 CCCCAACAGCTGTGAACCTCTCAGGCTTCTTTAAGAATTCAACCACCTCCACAAAATCTT 356935
Query 289316 ATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|| || |||||| || || |||||| | || ||
Sbjct 356936 GCTTGGCTTCATCAACCCCAGCAACATCATCGAATGT 356972
>seq105
Length=925015
Score = 116 bits (128), Expect = 1e-20
Identities = 215/313 (69%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
|||||| || |||||| ||| | | | | || || || ||||| |||||| ||
Sbjct 72493 CATAATATCCTCCATAGCCTTCACCAGTCTCCTTTGGATGTACCCAGTCTCAGATGTCTT 72552
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || ||||| | | ||||||||||||||| || || | ||| | ||
Sbjct 72553 AACAGCAGTATCTATAAGACCTTCCCTACCACCCATAGCATGAAAAAAGAACTCCTGTGG 72612
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
||| || | | | || |||| || || ||||| || || || ||
Sbjct 72613 AGTTAGTCCACGCAGGTATGAATTCTCTACAAATCCACGACTTTCTGGTCCATAATCATC 72672
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803
|| |||||||| |||| |||| || | | | | ||||| ||||| ||||| || ||||
Sbjct 72673 TTTAGTAAAGTGGGGCAACGTCCGGTCTATGA-ACCCGTACGGGATTCGCTTACCCTCAA 72731
Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863
||||||||||||||| || | | ||||||| || || || | | ||| || ||||| |
Sbjct 72732 CGTTCTGCTGTCCCACACAAGCAGTCATCTGTGATATGTTGATAAAACTCCCTTTGGACC 72791
Query 302864 CAGCATTTACCAT 302876
| || | |||||
Sbjct 72792 CTGCTGTAACCAT 72804
>seq450
Length=378432
Score = 113 bits (124), Expect = 1e-19
Identities = 212/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
|||||| || |||||| ||| | | | | || || || ||||| |||||| ||
Sbjct 77660 CATAATATCCTCCATAGCCTTCACCAGTCTCCTTTGGATGTACCCAGTCTCAGATGTCTT 77601
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || ||||| | | ||||||||||||||| || || | ||| | ||
Sbjct 77600 AACAGCAGTATCTATAAGACCTTCCCTACCACCCATAGCATGAAAAAAGAACTCCTGTGG 77541
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
||| || | | | || |||| || || ||||| || || || ||
Sbjct 77540 AGTTAGTCCACGCAGGTATGAATTCTCTACAAATCCACGACTTTCTGGTCCATAATCATC 77481
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
|| |||||||| |||| |||| || | ||||| ||||| ||||| || |||||
Sbjct 77480 TTTAGTAAAGTGGGGCAACGTCCGGTCGATGAACCCGTACGGGATTCGCTTACCCTCAAC 77421
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
|||||||||||||| || | | ||||||| || || || | | ||| || ||||| ||
Sbjct 77420 GTTCTGCTGTCCCACACAAGCAGTCATCTGTGATATGTTGATAAAACTCCCTTTGGACCC 77361
Query 302865 AGCATTTACCAT 302876
|| | |||||
Sbjct 77360 TGCTGTAACCAT 77349
>seq489
Length=346447
Score = 102 bits (112), Expect = 2e-16
Identities = 213/315 (68%), Gaps = 2/315 (1%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| |||||||| || ||||| || || | || || | | ||||| || | |
Sbjct 106888 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCACACTGTCTTGCTTCTTGA 106829
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| || || | || | |||| ||||||| ||||||| | |||||| ||| |
Sbjct 106828 AATAAGCTTCGAACCCTTGACGGACCAACACCAACAAACATTTCCATAAATTCTGAACCA 106769
Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208
|||| | || ||| | || | ||| || || |||| | || ||||| |||||
Sbjct 106768 GATA-TCGATAGAAAAGGCACCCCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTCTT 106710
Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268
||||||||||| || || | | ||| | || ||||| | |||||| || ||
Sbjct 106709 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 106650
Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328
|||||||| ||| | |||| ||| | |||| ||| | ||| | || ||||||||
Sbjct 106649 ATATTTCTTAGGATTTTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCATC 106590
Query 289329 ACATCCTGCTACATC 289343
||| || ||||||||
Sbjct 106589 ACAGCCAGCTACATC 106575
Score = 102 bits (112), Expect = 2e-16
Identities = 213/315 (68%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| |||||||| || ||||| || || | || || | | ||||| || | |
Sbjct 148089 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCACACTGTCTTGCTTCTTGA 148148
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| || || | || | |||| ||||||| ||||||| | |||||| ||| |
Sbjct 148149 AATAAGCTTCGAACCCTTGACGGACCAACACCAACAAACATTTCCATAAATTCTGAACCA 148208
Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208
|||| | || ||| | || | ||| || || |||| | || ||||| |||||
Sbjct 148209 GATA-TCGATAGAAAAGGCACCCCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTCTT 148267
Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268
||||||||||| || || | | ||| | || ||||| | |||||| || ||
Sbjct 148268 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 148327
Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328
|||||||| ||| | |||| ||| | |||| ||| | ||| | || ||||||||
Sbjct 148328 ATATTTCTTAGGATTTTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCATC 148387
Query 289329 ACATCCTGCTACATC 289343
||| || ||||||||
Sbjct 148388 ACAGCCAGCTACATC 148402
>seq835
Length=176933
Score = 93.3 bits (102), Expect = 1e-13
Identities = 211/315 (67%), Gaps = 2/315 (1%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| |||||||| || ||||| || || | || || | ||||| || | |
Sbjct 31579 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCGCACTGTCTTGCTTCTTGA 31520
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| || || | || | |||| ||||||| ||||||| | ||| || ||| |
Sbjct 31519 AATAAGCTTCGAACCCTTGACGGACCAACACCAACAAACATTTCCATAAAATCTGAACCA 31460
Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208
|||| | || ||| | || | ||| || || |||| | || ||||| |||||
Sbjct 31459 GATA-TAGATAGAAAAGGCACCCCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTCTT 31401
Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268
||||||||||| || || | | ||| | || ||||| | |||||| || ||
Sbjct 31400 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 31341
Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328
|||||||| ||| | |||| ||| | |||| ||| | ||| | || ||||||||
Sbjct 31340 ATATTTCTTAGGATTTTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCATC 31281
Query 289329 ACATCCTGCTACATC 289343
||| || ||||||||
Sbjct 31280 ACAGCCAGCTACATC 31266
>seq283
Length=528073
Score = 93.3 bits (102), Expect = 1e-13
Identities = 219/327 (67%), Gaps = 8/327 (2%)
Strand=Plus/Plus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|| |||||||| || ||||||||||||| || ||||||||||| |||| |
Sbjct 125193 CCCACAGCATCTATCTCGTCAATGAAAACCAGGCACGGAGAATTCGCCTTCGCCTTGTTG 125252
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| || ||||| || | || ||||| | || ||| |||| || | || || || |
Sbjct 125253 AACAAATCTCTAACCCTAGAAGCTCCTACTCCCACAAACATCTCAATGAACTCTGACCCT 125312
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| | | ||| | || ||||| ||||| | ||| | ||||| ||||||||
Sbjct 125313 GACAGAGAGAAGAAAGGCACCCCCGCTTCACCTGCAATGGCCTTGGCCAGCAGTGTCTTT 125372
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTT-TTGCCCCA---GCAGA 289265
|| || || || || ||| | | || || |||||||| | || |||| ||| |||||
Sbjct 125373 CCGGTCCCCGGCGGCCCCACAAGAAGTAC-CCCTTTGGGAATTCTTGCTCCAACTGCAGA 125431
Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
| | || || ||| | || | ||||| ||||| || | | || | ||||| ||
Sbjct 125432 ---AAACTTTTCTGGGGTTTTCAGGAATTCAACAATCTCTTGGAAATCTTGCTTTGCTTC 125488
Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352
||| ||| || |||||| |||| ||
Sbjct 125489 ATCGACTCCGGCCACATCATCAAATGT 125515
>seq246
Length=558083
Score = 91.5 bits (100), Expect = 4e-13
Identities = 103/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
||||||| || |||||||| || || || | |||||||||| ||||||||| ||| |
Sbjct 220480 GCAAATAGATCCCTTACACGAGAGGCACCCATGCCAACATACAATTCTACAAACTCACTA 220539
Query 289147 GCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
|| || |||| ||||| | |||| ||||| || || || ||| | || ||||| |
Sbjct 220540 GCAGAGCAACTT--ATGAAGGGCACATCAGCTTCCCCAGCCACAGCCTTGGCAAGAAGAG 220597
Query 289205 TCTTACCTGTTCCAGG 289220
|||||||||| |||||
Sbjct 220598 TCTTACCTGTCCCAGG 220613
>seq796
Length=190008
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/132 (77%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889
||| ||||| |||| || || ||| || || ||||||| ||||||||||||||||
Sbjct 113301 GGGGACACCTAGGGTAACATTCT--TTGCACTCA-CACCAGCGTAGTGGAAAGTATTCAG 113357
Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA-TCATACCAACCATTTCTC 301948
|| | ||||| | ||||| |||||| ||||| |||| ||| |||| |||||| |
Sbjct 113358 TGTCATCTGAGTGGCAGGCTCTCCAATAGACTGTGCAGCAACACAT-CCAATCATTTCCC 113416
Query 301949 CTGGTGCTACAA 301960
||||||||||||
Sbjct 113417 CTGGTGCTACAA 113428
>seq948
Length=150978
Score = 84.2 bits (92), Expect = 6e-11
Identities = 102/137 (74%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145
|||||||| || |||||||| || || || | |||||||||| |||||||| |||
Sbjct 18115 TGCAAATAGATCCCTTACACGAGAGGCACCCATGCCAACATACAACTCTACAAACTCACT 18174
Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
||| || |||| || || | |||| ||||| || || || ||| | || |||||
Sbjct 18175 AGCAGAGCAACTT--ATAAAGGGCACATCAGCTTCCCCAGCCACAGCCTTGGCAAGAAGA 18232
Query 289204 GTCTTACCTGTTCCAGG 289220
||||||||||| |||||
Sbjct 18233 GTCTTACCTGTCCCAGG 18249
>seq571
Length=291792
Score = 84.2 bits (92), Expect = 6e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010
|| ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| |
Sbjct 282040 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 281981
Query 409011 TAGAACAttttttt 409024
|| |||||||||
Sbjct 281980 GGGACCATTTTTTT 281967
>seq8
Length=1797525
Score = 84.2 bits (92), Expect = 6e-11
Identities = 83/107 (78%), Gaps = 3/107 (3%)
Strand=Plus/Minus
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
|||||| ||||||||| || || ||||| ||||| || ||||| | ||| || || |
Sbjct 10381 ACTACCTTTCCTCTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCT 10322
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150
| ||| |||| ||| |||||||| || ||||| ||||| |||||||
Sbjct 10321 CAACATTGGAACAATGCCATTGGAGGTTCCATTTGTTCCACGAATAT 10275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471776452579334
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