Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq340 134 4e-26 seq105 116 1e-20 seq450 113 1e-19 seq489 102 2e-16 seq835 93.3 1e-13 seq283 93.3 1e-13 seq246 91.5 4e-13 seq796 86.0 2e-11 seq948 84.2 6e-11 seq571 84.2 6e-11 seq8 84.2 6e-11 >seq340 Length=460696 Score = 134 bits (148), Expect = 4e-26 Identities = 346/517 (67%), Gaps = 20/517 (4%) Strand=Plus/Plus Query 288843 CACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTT 288902 |||| ||| ||||||| |||| | ||| || | ||| | ||||| || ||||| Sbjct 356469 CACCTGCCTGTCAAACCGGCCAGGCCTCAATAAGGCAGAGTCAAGAATATCTGCCCTGTT 356528 Query 288903 TGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAA 288960 || ||||| | || | |||| | | ||| ||| ||| |||||||| ||| ||| Sbjct 356529 AGTCGCTGCAACCACGATAATACCAGT--GTTGCCTTCAAAACCATCCATTTCTGTCAAA 356586 Query 288961 ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GC 289018 | |||||||| ||||||||||||||||| || |||| |||| | || | Sbjct 356587 AGCTGATTAAGGGTTTGTTCCCTTTCATCGTTC---CCTC------CACCA-ATTCCAGT 356636 Query 289019 TCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTG 289076 |||| ||| |||||||| |||||||| |||| || | | || || | ||| | Sbjct 356637 TCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTC 356696 Query 289077 TCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 | || | ||| | || | || ||||| || |||| |||||| ||||||| || Sbjct 356697 CTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCAACAAACATTTCAAC 356756 Query 289137 AAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 |||||||||| | || | | || | |||| ||| ||||| || || | |||| | | Sbjct 356757 AAATTCAGAACCTGA-AATGGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTG 356815 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | || || ||||| || ||||| || || || | | ||||| || || || | | | Sbjct 356816 CTAGCAGAGTCTTTCCGGTTCCTGGAGGGCCAACAAGAAGAACCCCTTTAGGAATTCGAG 356875 Query 289256 CCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315 ||||| ||| | | ||||||| ||||||| ||||| || | ||| ||| || | Sbjct 356876 CCCCAACAGCTGTGAACCTCTCAGGCTTCTTTAAGAATTCAACCACCTCCACAAAATCTT 356935 Query 289316 ATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || |||||| || || |||||| | || || Sbjct 356936 GCTTGGCTTCATCAACCCCAGCAACATCATCGAATGT 356972 >seq105 Length=925015 Score = 116 bits (128), Expect = 1e-20 Identities = 215/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | | | || || || ||||| |||||| || Sbjct 72493 CATAATATCCTCCATAGCCTTCACCAGTCTCCTTTGGATGTACCCAGTCTCAGATGTCTT 72552 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || ||||| | | ||||||||||||||| || || | ||| | || Sbjct 72553 AACAGCAGTATCTATAAGACCTTCCCTACCACCCATAGCATGAAAAAAGAACTCCTGTGG 72612 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||| || | | | || |||| || || ||||| || || || || Sbjct 72613 AGTTAGTCCACGCAGGTATGAATTCTCTACAAATCCACGACTTTCTGGTCCATAATCATC 72672 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 || |||||||| |||| |||| || | | | | ||||| ||||| ||||| || |||| Sbjct 72673 TTTAGTAAAGTGGGGCAACGTCCGGTCTATGA-ACCCGTACGGGATTCGCTTACCCTCAA 72731 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 ||||||||||||||| || | | ||||||| || || || | | ||| || ||||| | Sbjct 72732 CGTTCTGCTGTCCCACACAAGCAGTCATCTGTGATATGTTGATAAAACTCCCTTTGGACC 72791 Query 302864 CAGCATTTACCAT 302876 | || | ||||| Sbjct 72792 CTGCTGTAACCAT 72804 >seq450 Length=378432 Score = 113 bits (124), Expect = 1e-19 Identities = 212/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | | | || || || ||||| |||||| || Sbjct 77660 CATAATATCCTCCATAGCCTTCACCAGTCTCCTTTGGATGTACCCAGTCTCAGATGTCTT 77601 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || ||||| | | ||||||||||||||| || || | ||| | || Sbjct 77600 AACAGCAGTATCTATAAGACCTTCCCTACCACCCATAGCATGAAAAAAGAACTCCTGTGG 77541 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||| || | | | || |||| || || ||||| || || || || Sbjct 77540 AGTTAGTCCACGCAGGTATGAATTCTCTACAAATCCACGACTTTCTGGTCCATAATCATC 77481 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || |||||||| |||| |||| || | ||||| ||||| ||||| || ||||| Sbjct 77480 TTTAGTAAAGTGGGGCAACGTCCGGTCGATGAACCCGTACGGGATTCGCTTACCCTCAAC 77421 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 |||||||||||||| || | | ||||||| || || || | | ||| || ||||| || Sbjct 77420 GTTCTGCTGTCCCACACAAGCAGTCATCTGTGATATGTTGATAAAACTCCCTTTGGACCC 77361 Query 302865 AGCATTTACCAT 302876 || | ||||| Sbjct 77360 TGCTGTAACCAT 77349 >seq489 Length=346447 Score = 102 bits (112), Expect = 2e-16 Identities = 213/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | | ||||| || | | Sbjct 106888 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCACACTGTCTTGCTTCTTGA 106829 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | || | |||| ||||||| ||||||| | |||||| ||| | Sbjct 106828 AATAAGCTTCGAACCCTTGACGGACCAACACCAACAAACATTTCCATAAATTCTGAACCA 106769 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | || | ||| || || |||| | || ||||| ||||| Sbjct 106768 GATA-TCGATAGAAAAGGCACCCCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTCTT 106710 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||||||||| || || | | ||| | || ||||| | |||||| || || Sbjct 106709 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 106650 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||||||| ||| | |||| ||| | |||| ||| | ||| | || |||||||| Sbjct 106649 ATATTTCTTAGGATTTTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCATC 106590 Query 289329 ACATCCTGCTACATC 289343 ||| || |||||||| Sbjct 106589 ACAGCCAGCTACATC 106575 Score = 102 bits (112), Expect = 2e-16 Identities = 213/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | | ||||| || | | Sbjct 148089 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCACACTGTCTTGCTTCTTGA 148148 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | || | |||| ||||||| ||||||| | |||||| ||| | Sbjct 148149 AATAAGCTTCGAACCCTTGACGGACCAACACCAACAAACATTTCCATAAATTCTGAACCA 148208 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | || | ||| || || |||| | || ||||| ||||| Sbjct 148209 GATA-TCGATAGAAAAGGCACCCCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTCTT 148267 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||||||||| || || | | ||| | || ||||| | |||||| || || Sbjct 148268 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 148327 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||||||| ||| | |||| ||| | |||| ||| | ||| | || |||||||| Sbjct 148328 ATATTTCTTAGGATTTTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCATC 148387 Query 289329 ACATCCTGCTACATC 289343 ||| || |||||||| Sbjct 148388 ACAGCCAGCTACATC 148402 >seq835 Length=176933 Score = 93.3 bits (102), Expect = 1e-13 Identities = 211/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | ||||| || | | Sbjct 31579 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCGCACTGTCTTGCTTCTTGA 31520 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | || | |||| ||||||| ||||||| | ||| || ||| | Sbjct 31519 AATAAGCTTCGAACCCTTGACGGACCAACACCAACAAACATTTCCATAAAATCTGAACCA 31460 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | || | ||| || || |||| | || ||||| ||||| Sbjct 31459 GATA-TAGATAGAAAAGGCACCCCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTCTT 31401 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||||||||| || || | | ||| | || ||||| | |||||| || || Sbjct 31400 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 31341 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||||||| ||| | |||| ||| | |||| ||| | ||| | || |||||||| Sbjct 31340 ATATTTCTTAGGATTTTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCATC 31281 Query 289329 ACATCCTGCTACATC 289343 ||| || |||||||| Sbjct 31280 ACAGCCAGCTACATC 31266 >seq283 Length=528073 Score = 93.3 bits (102), Expect = 1e-13 Identities = 219/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||| || ||||||||||||| || ||||||||||| |||| | Sbjct 125193 CCCACAGCATCTATCTCGTCAATGAAAACCAGGCACGGAGAATTCGCCTTCGCCTTGTTG 125252 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || ||||| || | || ||||| | || ||| |||| || | || || || | Sbjct 125253 AACAAATCTCTAACCCTAGAAGCTCCTACTCCCACAAACATCTCAATGAACTCTGACCCT 125312 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | | ||| | || ||||| ||||| | ||| | ||||| |||||||| Sbjct 125313 GACAGAGAGAAGAAAGGCACCCCCGCTTCACCTGCAATGGCCTTGGCCAGCAGTGTCTTT 125372 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTT-TTGCCCCA---GCAGA 289265 || || || || || ||| | | || || |||||||| | || |||| ||| ||||| Sbjct 125373 CCGGTCCCCGGCGGCCCCACAAGAAGTAC-CCCTTTGGGAATTCTTGCTCCAACTGCAGA 125431 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | || || ||| | || | ||||| ||||| || | | || | ||||| || Sbjct 125432 ---AAACTTTTCTGGGGTTTTCAGGAATTCAACAATCTCTTGGAAATCTTGCTTTGCTTC 125488 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||| || |||||| |||| || Sbjct 125489 ATCGACTCCGGCCACATCATCAAATGT 125515 >seq246 Length=558083 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||||| || |||||||| || || || | |||||||||| ||||||||| ||| | Sbjct 220480 GCAAATAGATCCCTTACACGAGAGGCACCCATGCCAACATACAATTCTACAAACTCACTA 220539 Query 289147 GCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || |||| ||||| | |||| ||||| || || || ||| | || ||||| | Sbjct 220540 GCAGAGCAACTT--ATGAAGGGCACATCAGCTTCCCCAGCCACAGCCTTGGCAAGAAGAG 220597 Query 289205 TCTTACCTGTTCCAGG 289220 |||||||||| ||||| Sbjct 220598 TCTTACCTGTCCCAGG 220613 >seq796 Length=190008 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/132 (77%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 ||| ||||| |||| || || ||| || || ||||||| |||||||||||||||| Sbjct 113301 GGGGACACCTAGGGTAACATTCT--TTGCACTCA-CACCAGCGTAGTGGAAAGTATTCAG 113357 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA-TCATACCAACCATTTCTC 301948 || | ||||| | ||||| |||||| ||||| |||| ||| |||| |||||| | Sbjct 113358 TGTCATCTGAGTGGCAGGCTCTCCAATAGACTGTGCAGCAACACAT-CCAATCATTTCCC 113416 Query 301949 CTGGTGCTACAA 301960 |||||||||||| Sbjct 113417 CTGGTGCTACAA 113428 >seq948 Length=150978 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| || |||||||| || || || | |||||||||| |||||||| ||| Sbjct 18115 TGCAAATAGATCCCTTACACGAGAGGCACCCATGCCAACATACAACTCTACAAACTCACT 18174 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || |||| || || | |||| ||||| || || || ||| | || ||||| Sbjct 18175 AGCAGAGCAACTT--ATAAAGGGCACATCAGCTTCCCCAGCCACAGCCTTGGCAAGAAGA 18232 Query 289204 GTCTTACCTGTTCCAGG 289220 ||||||||||| ||||| Sbjct 18233 GTCTTACCTGTCCCAGG 18249 >seq571 Length=291792 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 282040 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 281981 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 281980 GGGACCATTTTTTT 281967 >seq8 Length=1797525 Score = 84.2 bits (92), Expect = 6e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||||| ||||||||| || || ||||| ||||| || ||||| | ||| || || | Sbjct 10381 ACTACCTTTCCTCTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCT 10322 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | ||| |||| ||| |||||||| || ||||| ||||| ||||||| Sbjct 10321 CAACATTGGAACAATGCCATTGGAGGTTCCATTTGTTCCACGAATAT 10275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471776452579334