Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq222 91.5 2e-13 seq157 87.8 2e-12 seq41 84.2 2e-11 >seq222 Length=596275 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 |||||||| || || ||||||||| | ||||| || ||||| || | ||||| || || Sbjct 106799 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 106858 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 || | |||||||| ||||| ||| ||||| || | ||||| || ||||||||||| Sbjct 106859 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 106918 Query 158357 GCT 158359 ||| Sbjct 106919 GCT 106921 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 |||||||| || || ||||||||| | ||||| || ||||| || | ||||| || || Sbjct 179812 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 179753 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 || | |||||||| ||||| ||| ||||| || | ||||| || ||||||||||| Sbjct 179752 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 179693 Query 158357 GCT 158359 ||| Sbjct 179692 GCT 179690 >seq157 Length=750868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 159740 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTT 159799 |||||| |||||||| || | || ||||| || ||||| || ||| ||||| | || Sbjct 399152 TCAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTT 399211 Query 159800 GTTCCTTC-AAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTG 159858 || ||| |||| ||||| || || || || || | || |||||||||||||||| || Sbjct 399212 TTTTTTTCCAAGGGTTTCATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTG 399271 Query 159859 --GTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACT 159916 || || || | || || | | || || ||||| | ||||||||| | || | Sbjct 399272 AAGTGTA--GGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTT 399329 Query 159917 GTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAG 159969 | ||||||| | || |||||||| || | || ||| | ||||||||| Sbjct 399330 ATTTGAAGATAGTGATGGTGCAAATACATTCCATGC-TTTAACCCAACTCAAG 399381 >seq41 Length=1285553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 158741 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 158800 ||||| ||||||||| ||||| || || || |||||| |||| | ||||| || Sbjct 342933 GAGGACGTATACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGC 342992 Query 158801 CGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 158860 | || || ||||||| || || || || || |||| ||| | ||| |||||| Sbjct 342993 AGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCG 343052 Query 158861 GATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCA 158920 || ||| || | || ||||||||||||| | |||||||| || || || || || Sbjct 343053 GACCAGAGCTTTCTGGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCT 343112 Query 158921 TATCCAACATCTGA 158934 ||||| | ||||| Sbjct 343113 TATCCGTCGTCTGA 343126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548359443088240