Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq41 102 9e-17 seq157 95.1 1e-14 seq222 89.7 6e-13 seq1136 86.0 7e-12 >seq41 Length=1285553 Score = 102 bits (112), Expect = 9e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||||| | || || || ||||| |||| |||| || |||||| || | || || Sbjct 342942 TACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGG 343001 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCA-ATC 152122 | || ||||| || || || ||| |||||||||| | || |||||| ||||| | | Sbjct 343002 TCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGC 343061 Query 152123 ATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAAC 152182 |||| ||||||||| ||||||| ||||| ||||||||||| || || ||||| | Sbjct 343062 TTTCT-GGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCTTATCCGTC 343120 Query 152183 TTCTGATGTCACCCT 152197 ||||| ||||| || Sbjct 343121 GTCTGACGTCACACT 343135 >seq157 Length=750868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 152805 TCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCT 152864 ||| || |||||||| || | || ||| || || ||||| || || ||||| | | Sbjct 399152 TCAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTT 399211 Query 152865 CTTCCTTC-AAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAG 152923 || ||| |||| || || || || |||||||| | |||||||||||||| |||| | Sbjct 399212 TTTTTTTCCAAGGGTTTCATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTG 399271 Query 152924 GTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 152983 | | ||| | || || | | || |||||||||| ||| ||||| ||||||| | Sbjct 399272 AAGTGTAGGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTTAT 399331 Query 152984 ATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTT 153020 | ||||| |||| ||||| || ||| | ||||| Sbjct 399332 TTGAAGATAGTGATGGTGCAAATACATTCCATGCTTT 399368 >seq222 Length=596275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525 || ||||| ||||| || || || | |||||||| || || ||||| ||| | ||| Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828 Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585 ||||| ||||| || | || ||||| ||||| | | ||||| ||||| ||| ||| Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888 Query 151586 AACAATTCCCGTTCGCTGCACTTCTTCCTCGC 151617 || |||| ||||| | ||||||||||| || Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 106920 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525 || ||||| ||||| || || || | |||||||| || || ||||| ||| | ||| Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783 Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585 ||||| ||||| || | || ||||| ||||| | | ||||| ||||| ||| ||| Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723 Query 151586 AACAATTCCCGTTCGCTGCACTTCTTCCTCGC 151617 || |||| ||||| | ||||||||||| || Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 179691 >seq1136 Length=104545 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 || ||| |||||| | || || || ||||| || |||| || |||||| || Sbjct 34004 GACGACGTGTACATTCTCGACGCGGCGGAGGAGGCCGGGATTGACCTGCCCTACTCCTGC 34063 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114 | || || | || ||||| || || || || | |||||||| || |||||| Sbjct 34064 AGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAAGTCGTGAGTGGGGGTGTGGATCAGTCG 34123 Query 152115 GACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGC 152173 ||||| | | |||| ||||||||| |||||||| ||||||||||| || ||||| || Sbjct 34124 GACCAGAGCTTTCT-GGATGATGAGCAGATTGATGGTGGATTCGTGCTCACTTGTGTGGC 34182 Query 152174 ATATCCAACTTCTGATGTCACCCT 152197 ||||| | ||||| ||||| || Sbjct 34183 TTATCCGTCGTCTGACGTCACACT 34206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549607409049040