Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq41 102 9e-17
seq157 95.1 1e-14
seq222 89.7 6e-13
seq1136 86.0 7e-12
>seq41
Length=1285553
Score = 102 bits (112), Expect = 9e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063
||||| | || || || ||||| |||| |||| || |||||| || | || ||
Sbjct 342942 TACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGG 343001
Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCA-ATC 152122
| || ||||| || || || ||| |||||||||| | || |||||| ||||| | |
Sbjct 343002 TCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGC 343061
Query 152123 ATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAAC 152182
|||| ||||||||| ||||||| ||||| ||||||||||| || || ||||| |
Sbjct 343062 TTTCT-GGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCTTATCCGTC 343120
Query 152183 TTCTGATGTCACCCT 152197
||||| ||||| ||
Sbjct 343121 GTCTGACGTCACACT 343135
>seq157
Length=750868
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/217 (70%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 152805 TCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCT 152864
||| || |||||||| || | || ||| || || ||||| || || ||||| | |
Sbjct 399152 TCAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTT 399211
Query 152865 CTTCCTTC-AAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAG 152923
|| ||| |||| || || || || |||||||| | |||||||||||||| |||| |
Sbjct 399212 TTTTTTTCCAAGGGTTTCATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTG 399271
Query 152924 GTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 152983
| | ||| | || || | | || |||||||||| ||| ||||| ||||||| |
Sbjct 399272 AAGTGTAGGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTTAT 399331
Query 152984 ATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTT 153020
| ||||| |||| ||||| || ||| | |||||
Sbjct 399332 TTGAAGATAGTGATGGTGCAAATACATTCCATGCTTT 399368
>seq222
Length=596275
Score = 89.7 bits (98), Expect = 6e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525
|| ||||| ||||| || || || | |||||||| || || ||||| ||| | |||
Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828
Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585
||||| ||||| || | || ||||| ||||| | | ||||| ||||| ||| |||
Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888
Query 151586 AACAATTCCCGTTCGCTGCACTTCTTCCTCGC 151617
|| |||| ||||| | ||||||||||| ||
Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 106920
Score = 89.7 bits (98), Expect = 6e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525
|| ||||| ||||| || || || | |||||||| || || ||||| ||| | |||
Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783
Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585
||||| ||||| || | || ||||| ||||| | | ||||| ||||| ||| |||
Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723
Query 151586 AACAATTCCCGTTCGCTGCACTTCTTCCTCGC 151617
|| |||| ||||| | ||||||||||| ||
Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 179691
>seq1136
Length=104545
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054
|| ||| |||||| | || || || ||||| || |||| || |||||| ||
Sbjct 34004 GACGACGTGTACATTCTCGACGCGGCGGAGGAGGCCGGGATTGACCTGCCCTACTCCTGC 34063
Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114
| || || | || ||||| || || || || | |||||||| || ||||||
Sbjct 34064 AGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAAGTCGTGAGTGGGGGTGTGGATCAGTCG 34123
Query 152115 GACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGC 152173
||||| | | |||| ||||||||| |||||||| ||||||||||| || ||||| ||
Sbjct 34124 GACCAGAGCTTTCT-GGATGATGAGCAGATTGATGGTGGATTCGTGCTCACTTGTGTGGC 34182
Query 152174 ATATCCAACTTCTGATGTCACCCT 152197
||||| | ||||| ||||| ||
Sbjct 34183 TTATCCGTCGTCTGACGTCACACT 34206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549607409049040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |