Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq687 95.1 1e-14 seq59 95.1 1e-14 seq15 84.2 2e-11 >seq687 Length=229775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || || || || |||||||||||| | ||| || | Sbjct 53572 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 53631 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || || ||||| || ||| | ||| || ||| Sbjct 53632 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 53691 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | || | |||||| || ||||| ||||||| || ||| | || || |||||| Sbjct 53692 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGGACACTTGCTGACTACAAC 53751 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| ||||| | | ||||| || || Sbjct 53752 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGTGG 53798 >seq59 Length=1152742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || || || || |||||||||||| | ||| || | Sbjct 731053 ATGCAAATCTTTGTGAAGACCTTGACTGGGAAAACCATTACCCTGGAAGTTGAAAGTTCT 731112 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || || ||||| || ||| | ||| || ||| Sbjct 731113 GATACAATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 731172 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | || | |||||| || ||||| ||||||| || ||| | || || |||||| Sbjct 731173 CAAAGGTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGGACACTTGCTGACTACAAC 731232 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| ||||| | | ||||| || || Sbjct 731233 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGTGG 731279 >seq15 Length=1624393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 110356 GAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAA 110415 ||||||| ||||| || ||| | || ||||| || || ||||||| ||| || || Sbjct 1057528 GAAGATTCAAGACAAGGAGGGCATTCCTCCAGATCAGCAGAGGCTTATTTTTGCCGGGAA 1057469 Query 110416 ACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCA 110475 ||| ||||||||| ||| || |||||||||||||||| || || || || || | || Sbjct 1057468 GCAGTTGGAGGATGGCAGGACCCTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCA 1057409 Query 110476 CATGGTGTTAAGACTGCGAGGGGG 110499 | | ||| | || || || || || Sbjct 1057408 CCTTGTGCTCAGGCTTCGCGGTGG 1057385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412830621251726