Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq15 102 7e-17
seq580 86.0 5e-12
seq54 86.0 5e-12
seq1 86.0 5e-12
>seq15
Length=1624393
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| |||||||||||||| |||| || || || ||||| |||| ||| |||
Sbjct 1075287 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATTACTCTCGAGGTCGAGAGCTCT 1075228
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | || || ||||| ||||| || || | || || |
Sbjct 1075227 -GATACCATCGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCAGACTA 1075169
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | |||| || ||||| || ||||||||| | ||| ||||||| |||||
Sbjct 1075168 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACATTGGCGGATTACAA 1075109
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||| |||||||||||||| |||||| |||| || | || |||| ||
Sbjct 1075108 CATCCAAAAGGAGTCTACTTTGCACTTGGTCCTGCGTCTGAGAGGTGG 1075061
Score = 82.4 bits (90), Expect = 6e-11
Identities = 145/210 (69%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||||||||| | || || || || ||||| | || || |
Sbjct 1057840 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACAATTACTTTGGAGGTCGAAAGTTCT 1057781
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG-GATCA 107674
||||| ||| | || || |||||| ||||| || || | ||| || ||
Sbjct 1057780 GATACGATCGATAACGTCAAGGCAAAGATCCAAGATAAGGAGGGAATCCCCCCCAGACCA 1057721
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | |||| ||| ||||| || ||||||| | || || | ||||| |||||
Sbjct 1057720 GCAGAGATTAATTTTTGCTGGTAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACAA 1057661
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| ||||||||||| || |||||| ||||
Sbjct 1057660 CATCCAAAAGGAGTCAACTTTGCACTTGGT 1057631
>seq580
Length=281551
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || |||||| | || ||||| ||||| ||| |||| |||| |
Sbjct 199395 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 199454
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || ||||| | ||| ||| |||
Sbjct 199455 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 199514
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||| || || | | ||| | || |||||||||
Sbjct 199515 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 199574
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| ||||||||||| || | ||| |||||
Sbjct 199575 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 199604
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||||||||| || | ||||| || ||||| ||| | || |||| |
Sbjct 200307 ATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGAGTTCG 200366
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || ||||| || || || || | || ||| |||
Sbjct 200367 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAG 200426
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || ||||| ||||| | | || ||||||||||||||
Sbjct 200427 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAAC 200486
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || |||||||| || | ||| ||||| ||
Sbjct 200487 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTG 200519
>seq54
Length=1192742
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || |||||| | || ||||| ||||| ||| |||| |||| |
Sbjct 263046 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 263105
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || ||||| | ||| ||| |||
Sbjct 263106 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 263165
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||| || || | | ||| | || |||||||||
Sbjct 263166 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 263225
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| ||||||||||| || | ||| |||||
Sbjct 263226 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 263255
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||||||||| || | ||||| || ||||| ||| | || |||| |
Sbjct 263958 ATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGAGTTCG 264017
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || ||||| || || || || | || ||| |||
Sbjct 264018 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAG 264077
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || ||||| ||||| | | || ||||||||||||||
Sbjct 264078 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAAC 264137
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || |||||||| || | ||| ||||| ||
Sbjct 264138 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTG 264170
>seq1
Length=4167794
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || ||||| || | ||||| || ||||| ||| | || |||| |||
Sbjct 1162603 ATGCAAATCTTCGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTC- 1162545
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || || |||||| || || || ||| | || ||| ||
Sbjct 1162544 CGACACCATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCGGACCA 1162485
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | ||| || || ||||| ||||||| | || | || ||||||||
Sbjct 1162484 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 1162425
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || || ||||| || | || |||||
Sbjct 1162424 CATCCAGAAAGAGTCCACTCTTCATTTGGTG 1162394
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| |||||||| || || | || ||||| ||||| ||| | || ||| ||| |
Sbjct 1162375 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGAGCTCG 1162316
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || || ||||| || || || || | || ||| ||
Sbjct 1162315 -GACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCGGACCA 1162257
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| || || ||||| ||||| | | || |||||||||||||
Sbjct 1162256 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACAA 1162197
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || |||||||| || | ||| ||||| ||
Sbjct 1162196 CATCCAGAAGGAGTCGACCCTTCACTTGGTGCTG 1162163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398866192619398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |