Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq15 102 7e-17 seq580 86.0 5e-12 seq54 86.0 5e-12 seq1 86.0 5e-12 >seq15 Length=1624393 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||||||||| |||| || || || ||||| |||| ||| ||| Sbjct 1075287 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATTACTCTCGAGGTCGAGAGCTCT 1075228 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||| ||||| || || | || || | Sbjct 1075227 -GATACCATCGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCAGACTA 1075169 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| || ||||| || ||||||||| | ||| ||||||| ||||| Sbjct 1075168 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACATTGGCGGATTACAA 1075109 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||||||||||||| |||||| |||| || | || |||| || Sbjct 1075108 CATCCAAAAGGAGTCTACTTTGCACTTGGTCCTGCGTCTGAGAGGTGG 1075061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | || || || || ||||| | || || | Sbjct 1057840 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACAATTACTTTGGAGGTCGAAAGTTCT 1057781 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG-GATCA 107674 ||||| ||| | || || |||||| ||||| || || | ||| || || Sbjct 1057780 GATACGATCGATAACGTCAAGGCAAAGATCCAAGATAAGGAGGGAATCCCCCCCAGACCA 1057721 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| ||| ||||| || ||||||| | || || | ||||| ||||| Sbjct 1057720 GCAGAGATTAATTTTTGCTGGTAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACAA 1057661 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| ||||||||||| || |||||| |||| Sbjct 1057660 CATCCAAAAGGAGTCAACTTTGCACTTGGT 1057631 >seq580 Length=281551 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || |||||| | || ||||| ||||| ||| |||| |||| | Sbjct 199395 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 199454 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || ||||| | ||| ||| ||| Sbjct 199455 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 199514 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| || || | | ||| | || ||||||||| Sbjct 199515 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 199574 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| ||||| Sbjct 199575 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 199604 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | ||||| || ||||| ||| | || |||| | Sbjct 200307 ATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGAGTTCG 200366 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || || | || ||| ||| Sbjct 200367 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAG 200426 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || |||||||||||||| Sbjct 200427 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAAC 200486 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || | ||| ||||| || Sbjct 200487 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTG 200519 >seq54 Length=1192742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || |||||| | || ||||| ||||| ||| |||| |||| | Sbjct 263046 ATGCAAATCTTCGTGAAAACTCTTACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCT 263105 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || ||||| | ||| ||| ||| Sbjct 263106 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 263165 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| || || | | ||| | || ||||||||| Sbjct 263166 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCAGACTACAAC 263225 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| ||||| Sbjct 263226 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 263255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | ||||| || ||||| ||| | || |||| | Sbjct 263958 ATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGAGTTCG 264017 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || || | || ||| ||| Sbjct 264018 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAG 264077 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || |||||||||||||| Sbjct 264078 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAAC 264137 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || | ||| ||||| || Sbjct 264138 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTG 264170 >seq1 Length=4167794 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| || | ||||| || ||||| ||| | || |||| ||| Sbjct 1162603 ATGCAAATCTTCGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTC- 1162545 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| || || || ||| | || ||| || Sbjct 1162544 CGACACCATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCGGACCA 1162485 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| ||||||| | || | || |||||||| Sbjct 1162484 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 1162425 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || ||||| || | || ||||| Sbjct 1162424 CATCCAGAAAGAGTCCACTCTTCATTTGGTG 1162394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || | || ||||| ||||| ||| | || ||| ||| | Sbjct 1162375 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGAGCTCG 1162316 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || || || | || ||| || Sbjct 1162315 -GACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCGGACCA 1162257 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||| ||||| | | || ||||||||||||| Sbjct 1162256 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACAA 1162197 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||| || | ||| ||||| || Sbjct 1162196 CATCCAGAAGGAGTCGACCCTTCACTTGGTGCTG 1162163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398866192619398