Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq157 113 5e-20 seq222 89.7 6e-13 seq1025 84.2 3e-11 >seq157 Length=750868 Score = 113 bits (124), Expect = 5e-20 Identities = 150/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 179386 CAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTT 179445 || || ||||||||||||| ||| |||||||| || || || ||| ||||| | || Sbjct 399153 CAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTTT 399212 Query 179446 TTCTTAC-AAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGG 179504 || || | |||| || || || || ||| | ||| | ||||| ||||||||||||| | Sbjct 399213 TTTTTTCCAAGGGTTTCATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTGA 399272 Query 179505 TATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTA 179564 | ||| | ||||||| | | ||||||||||| | |||||||| |||| || | Sbjct 399273 AGTGTAGGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTTATT 399332 Query 179565 TGAAGATGGAGAACAAGCAAACACATT 179591 ||||||| | || ||||| ||||| Sbjct 399333 TGAAGATAGTGATGGTGCAAATACATT 399359 >seq222 Length=596275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 178185 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 178244 || || ||||||| ||| || || | |||||||| || || ||||| ||| |||| Sbjct 106769 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 106828 Query 178245 TATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTC 178304 || || ||||| || | |||||||| || || | |||||||| |||||||| ||| Sbjct 106829 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 106888 Query 178305 AACAACTCCCGTTCACTGCACTTCTTCCTCGC 178336 || || | ||||| | ||||||||||| || Sbjct 106889 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 106920 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 178185 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 178244 || || ||||||| ||| || || | |||||||| || || ||||| ||| |||| Sbjct 179842 GAAACCACAGAAAATGAATCTACCAATGAAGGTTACAAATTTGGGCAAGAGGAAAAAACC 179783 Query 178245 TATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTC 178304 || || ||||| || | |||||||| || || | |||||||| |||||||| ||| Sbjct 179782 TACAATATCGTAGCTGTTCATGGTTATTTTGGCTGATTGATCTTTCAATATGCTAGTTTC 179723 Query 178305 AACAACTCCCGTTCACTGCACTTCTTCCTCGC 178336 || || | ||||| | ||||||||||| || Sbjct 179722 AATAATTGTCGTTCTTTACACTTCTTCCTAGC 179691 >seq1025 Length=132890 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 138526 GCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCC 138585 || |||||| |||||| | ||||| ||||| | || || |||| || || || ||| Sbjct 109172 GCGGATGATTGCTACATCTTAGATGCAGCTGAGAATGCTGGAGTTGAGCTGCCATATTCC 109231 Query 138586 TGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAG 138645 || | ||||| ||||| ||||||||||| || || | | || | ||||||||| Sbjct 109232 TGCAGGGCTGGGGCATGCTCTACCTGTGCAGGGAAGCTGGCATCGGGTTCAGTAGATCAG 109291 Query 138646 TCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGT 138704 || || || ||||| || || |||||| || || ||| || | | ||||||| || Sbjct 109292 TCCGATGGTTCATTCCTCGACGACAACCAAA-TGAAGGAGGGTTATGTGCTGACTTGTGT 109350 Query 138705 AGCATACCCCACATCCGA 138722 | | ||||| || || || Sbjct 109351 ATCGTACCCGACTTCGGA 109368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605650680427120