Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq37 87.8 4e-12 seq202 84.2 5e-11 >seq37 Length=1311203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 200/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 || ||| || | || ||||| || || ||||| | || | || | |||||||| Sbjct 1045422 GACTTTGTTCACAAGGAACTTATACAGTTTTCCATGGCAGACCTGCAAAGGTCTATTCCG 1045363 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||| | || |||| ||||| || || | |||||| | || || | ||| || || Sbjct 1045362 TCAATGGTTG-ATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCTTTTAAGAG 1045304 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 || || || |||||| ||||| ||||| | |||||||| || || ||| | | Sbjct 1045303 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCTGC 1045244 Query 279985 TTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 || || || ||||| || |||| | |||| | ||||| | || | || || |||||| Sbjct 1045243 CTACCACCATGGTGAGCAGAGTCT-TGCAAG-TACTATTATTGGGATGGCACAGGATTTT 1045186 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| || || | ||||| ||| ||||||||||||||||||| | |||| Sbjct 1045185 GTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCGTA 1045131 Score = 87.8 bits (96), Expect = 4e-12 Identities = 200/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 || ||| || | || ||||| || || ||||| | || | || | |||||||| Sbjct 1170604 GACTTTGTTCACAAGGAACTTATACAGTTTTCCATGGCAGACCTGCAAAGGTCTATTCCG 1170663 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||| | || |||| ||||| || || | |||||| | || || | ||| || || Sbjct 1170664 TCAATGGTTG-ATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCTTTTAAGAG 1170722 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 || || || |||||| ||||| ||||| | |||||||| || || ||| | | Sbjct 1170723 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCTGC 1170782 Query 279985 TTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 || || || ||||| || |||| | |||| | ||||| | || | || || |||||| Sbjct 1170783 CTACCACCATGGTGAGCAGAGTCT-TGCAAG-TACTATTATTGGGATGGCACAGGATTTT 1170840 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| || || | ||||| ||| ||||||||||||||||||| | |||| Sbjct 1170841 GTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCGTA 1170895 >seq202 Length=624202 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||| ||||| || || || || || ||||| || || |||||| || || |||||| Sbjct 31520 GTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGG 31461 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 ||||| ||||| || || ||||| ||||| | || ||||| | | |||||| |||| Sbjct 31460 CTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGAC 31401 Query 131984 GAAGCATTGCA 131994 || | ||||| Sbjct 31400 GAGGGCTTGCA 31390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186779620422902