Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1330 96.9 3e-15 seq801 96.9 3e-15 seq202 91.5 1e-13 >seq1330 Length=73179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || ||| | Sbjct 26545 CCCTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCCGAGTC 26600 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| || || || || || | || || ||||| ||||| Sbjct 26601 TTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTT 26660 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || |||||||||| ||||| ||| ||||| Sbjct 26661 CTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 26720 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGT 46982 | |||||||||| ||||| || | ||| ||||| |||||| Sbjct 26721 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGT 26763 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || ||| | Sbjct 46635 CCCTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCCGAGTC 46580 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| || || || || || | || || ||||| ||||| Sbjct 46579 TTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTT 46520 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || |||||||||| ||||| ||| ||||| Sbjct 46519 CTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 46460 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGT 46982 | |||||||||| ||||| || | ||| ||||| |||||| Sbjct 46459 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGT 46417 >seq801 Length=188201 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || ||| | Sbjct 11546 CCCTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCCGAGTC 11601 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| || || || || || | || || ||||| ||||| Sbjct 11602 TTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTT 11661 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || |||||||||| ||||| ||| ||||| Sbjct 11662 CTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 11721 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGT 46982 | |||||||||| ||||| || | ||| ||||| |||||| Sbjct 11722 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGT 11764 >seq202 Length=624202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || ||| | Sbjct 31592 CCTTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCCGAGTC 31537 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || || || || || || || || | || || ||||| ||||| Sbjct 31536 TTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTT 31477 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || |||||||||| ||||| ||| ||||| Sbjct 31476 CTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 31417 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGT 46982 | |||||||||| ||||| || | ||| ||||| |||||| Sbjct 31416 GCTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGT 31374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598200429520