Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1330 345 6e-89 seq801 345 6e-89 seq202 318 8e-81 seq250 87.8 3e-11 >seq1330 Length=73179 Score = 345 bits (382), Expect = 6e-89 Identities = 421/564 (75%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||||||| || | ||||||| ||||||| ||| |||| || |||| |||| | Sbjct 26152 GAGCCGCTGCTAGCTCC-TAACCCGGACCGCTTCTGTA-TGTTTCCGATCCAGTACCCGG 26209 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct 26210 AAATATGGGAAATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGAC 26268 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || || |||| |||||||| | || ||||| |||| | || ||| || | Sbjct 26269 CTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 26328 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| | |||||||| || ||| ||| |||||||||||| || || || || || | Sbjct 26329 CACATTCTCGCCTTCTT-CGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAG 26387 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| || || |||||||||||||||||||| Sbjct 26388 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCAT 26447 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||||||||| || | ||| ||||| |||| || ||| |||||||| | | Sbjct 26448 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 26507 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 26508 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCA 26567 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| ||| |||||| || ||| ||| |||| || ||||| |||| | Sbjct 26568 GTGGGCCCTGAGATGGATC------GACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGC 26621 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||| |||| ||||| || || |||||||| ||||||||||| || |||||||| || Sbjct 26622 CTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 26681 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 26682 AAAGCGCGGTTTAATGCCGGGACT 26705 Score = 345 bits (382), Expect = 6e-89 Identities = 421/564 (75%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||||||| || | ||||||| ||||||| ||| |||| || |||| |||| | Sbjct 47028 GAGCCGCTGCTAGCTCC-TAACCCGGACCGCTTCTGTA-TGTTTCCGATCCAGTACCCGG 46971 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct 46970 AAATATGGGAAATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGAC 46912 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || || |||| |||||||| | || ||||| |||| | || ||| || | Sbjct 46911 CTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 46852 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| | |||||||| || ||| ||| |||||||||||| || || || || || | Sbjct 46851 CACATTCTCGCCTTCTT-CGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAG 46793 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| || || |||||||||||||||||||| Sbjct 46792 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCAT 46733 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||||||||| || | ||| ||||| |||| || ||| |||||||| | | Sbjct 46732 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 46673 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 46672 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCA 46613 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| ||| |||||| || ||| ||| |||| || ||||| |||| | Sbjct 46612 GTGGGCCCTGAGATGGATC------GACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGC 46559 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||| |||| ||||| || || |||||||| ||||||||||| || |||||||| || Sbjct 46558 CTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 46499 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 46498 AAAGCGCGGTTTAATGCCGGGACT 46475 >seq801 Length=188201 Score = 345 bits (382), Expect = 6e-89 Identities = 421/564 (75%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||||||| || | ||||||| ||||||| ||| |||| || |||| |||| | Sbjct 11153 GAGCCGCTGCTAGCTCC-TAACCCGGACCGCTTCTGTA-TGTTTCCGATCCAGTACCCGG 11210 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct 11211 AAATATGGGAAATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGAC 11269 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || || |||| |||||||| | || ||||| |||| | || ||| || | Sbjct 11270 CTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 11329 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| | |||||||| || ||| ||| |||||||||||| || || || || || | Sbjct 11330 CACATTCTCGCCTTCTT-CGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAG 11388 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| || || |||||||||||||||||||| Sbjct 11389 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCAT 11448 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||||||||| || | ||| ||||| |||| || ||| |||||||| | | Sbjct 11449 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 11508 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 11509 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCA 11568 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| ||| |||||| || ||| ||| |||| || ||||| |||| | Sbjct 11569 GTGGGCCCTGAGATGGATC------GACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGC 11622 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||| |||| ||||| || || |||||||| ||||||||||| || |||||||| || Sbjct 11623 CTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 11682 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 11683 AAAGCGCGGTTTAATGCCGGGACT 11706 >seq202 Length=624202 Score = 318 bits (352), Expect = 8e-81 Identities = 415/564 (74%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||||||| || | ||||| | ||||| ||| |||| || |||| |||| Sbjct 31985 GAGCCGCTGCTAGCTCCG-AACCCTGATCGCTTCTGTA-TGTTTCCGATCCAGTACCCAG 31928 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 31927 AAATATGGGAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGAC 31869 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || || |||| ||| |||| | || ||||| |||| | || ||| || | Sbjct 31868 CTATGCCAGGACATCCGCCAGTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 31809 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| | |||||||| || ||| ||| ||| ||||| || || || || || || | Sbjct 31808 CACATTCTCGCCTTCTT-CGCTGCCTCCGACGGCATTGTCCTTGAAAATCTCGCTGGGAG 31750 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| || || |||||||||||||||||||| Sbjct 31749 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCAT 31690 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||||||||| || | ||| ||||| |||| || ||| |||||||| | | Sbjct 31689 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 31630 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 31629 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCTTGCGTCGCGAAGAAGGCCCA 31570 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| ||| |||||| || ||| ||| |||| || ||||| |||| | Sbjct 31569 GTGGGCCCTGAGATGGATC------GACGGCTCCGAGTCTTTCGCGGAGCGAATCGTAGC 31516 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||| |||| ||||| || || |||||||| ||||||||||| || |||||||| || Sbjct 31515 CTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 31456 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 31455 AAAGCGCGGTTTAATGCCGGGACT 31432 >seq250 Length=553039 Score = 87.8 bits (96), Expect = 3e-11 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | ||||| |||| | |||| || Sbjct 270120 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATTGGGATATCC---AGCAAGGCC 270173 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| ||| ||| ||||| | Sbjct 270174 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGC--G 270230 Query 725030 TCGCCT--GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 |||| | ||| | | ||||||| |||||| || | ||||||||||| ||| Sbjct 270231 TCGCGTTTGGCCAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACGGCC 270290 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || | | | || || || |||| |||||||| ||||||||||||| Sbjct 270291 GTCAGGTTGGTGCTTCCTGGTGAGCTCGCCAAACACGCCGTTTCCGAGGGCACCA 270345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177600742089484