Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq157 123 3e-23 seq222 87.8 2e-12 seq41 82.4 9e-11 >seq157 Length=750868 Score = 123 bits (136), Expect = 3e-23 Identities = 171/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 159825 TCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTT 159884 ||||||| |||||||||| || | ||| || |||||||| || ||| ||||| | || Sbjct 399152 TCAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTT 399211 Query 159885 GTTCCTTC--AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 159942 || ||| |||||||| | || || || | ||| | || |||||||||||||||| | Sbjct 399212 TTTTTTTCCAAGGGTTTC-ATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTT 399270 Query 159943 G--GTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACAT 160000 | || || || | || ||||| || || || ||||||||||||||||| | || | Sbjct 399271 GAAGTGTA--GGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTT 399328 Query 160001 TGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAG 160054 | ||||||||| | || ||||| ||||| | || ||| | || ||||||| Sbjct 399329 TATTTGAAGATAGTGATGGTGCAAATACATTCCATGC-TTTAACCCAACTCAAG 399381 >seq222 Length=596275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| || || || ||||| ||| | |||||||| ||||| || | ||||| || || Sbjct 106799 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 106858 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || | |||||||| ||||| ||| ||||| || | ||||| || ||||||||||| Sbjct 106859 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 106918 Query 158453 GCT 158455 ||| Sbjct 106919 GCT 106921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| || || || ||||| ||| | |||||||| ||||| || | ||||| || || Sbjct 179812 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 179753 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || | |||||||| ||||| ||| ||||| || | ||||| || ||||||||||| Sbjct 179752 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 179693 Query 158453 GCT 158455 ||| Sbjct 179692 GCT 179690 >seq41 Length=1285553 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 |||||||| ||||| || || ||||||||| |||| | ||| ||||| | || || Sbjct 342942 TACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGCAGGGCAGGG 343001 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 | || || || || || || || |||| || || | ||| || || || ||| Sbjct 343002 TCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCGGACCAGAGC 343061 Query 158964 TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACT 159023 || |||||||||||||||||| | |||||| | || || || || ||||||| | Sbjct 343062 TTTCTGGATGATGATCAGATTGGCGGTGGATTTGTGCTGACCTGCGTGGCTTATCCGTCG 343121 Query 159024 TCTGA 159028 ||||| Sbjct 343122 TCTGA 343126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573008370770400