Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq222 89.7 6e-13 seq157 84.2 3e-11 >seq222 Length=596275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 |||||||| || || ||||| ||| | || ||||| ||||| || | || ||||| ||| Sbjct 106799 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 106858 Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 || | |||||||| ||||||||| ||||| || | ||||| | ||||||||||| Sbjct 106859 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 106918 Query 181758 GC 181759 || Sbjct 106919 GC 106920 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 |||||||| || || ||||| ||| | || ||||| ||||| || | || ||||| ||| Sbjct 179812 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 179753 Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 || | |||||||| ||||||||| ||||| || | ||||| | ||||||||||| Sbjct 179752 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 179693 Query 181758 GC 181759 || Sbjct 179692 GC 179691 >seq157 Length=750868 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/210 (70%), Gaps = 7/210 (3%) Strand=Plus/Plus Query 182808 CAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTG 182867 ||||| |||||| || | ||| |||||||| || || || || | ||| | || Sbjct 399153 CAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTTT 399212 Query 182868 TTCCTTC--AGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTG 182925 || ||| |||||||| | || || ||| | ||| | || |||||||||||||||| || Sbjct 399213 TTTTTTCCAAGGGTTTC-ATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTG 399271 Query 182926 --GTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTT 182983 || || ||| | || ||| | | ||||| ||||||| || ||||| |||| || Sbjct 399272 AAGTGTA--GGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTT 399329 Query 182984 GTATGAAGATGGAGAACAGGCAAACACATT 183013 | ||||||| | || ||||| ||||| Sbjct 399330 ATTTGAAGATAGTGATGGTGCAAATACATT 399359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614600836304960