Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq222 96.9 4e-15 seq157 86.0 7e-12 >seq222 Length=596275 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 |||||||| || || ||||| ||| |||| || |||||||| || | |||||||| || Sbjct 106799 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 106858 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || | |||||||| ||||| ||| ||||| || | ||||| || ||||||||||| Sbjct 106859 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 106918 Query 159156 GCT 159158 ||| Sbjct 106919 GCT 106921 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 |||||||| || || ||||| ||| |||| || |||||||| || | |||||||| || Sbjct 179812 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 179753 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || | |||||||| ||||| ||| ||||| || | ||||| || ||||||||||| Sbjct 179752 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 179693 Query 159156 GCT 159158 ||| Sbjct 179692 GCT 179690 >seq157 Length=750868 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 160345 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTT 160404 |||||| |||||||| || | || ||||| || ||||| || ||| ||||| | || Sbjct 399152 TCAGTCTAGTTGGTTCTTTGTGCCCAATTTTGGTGTAGCAGCTATATTTTGATTCATCTT 399211 Query 160405 GTTCCTTC-AAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTG 160463 || ||| |||| ||||| || || || | ||| | || |||||||||||||||| || Sbjct 399212 TTTTTTTCCAAGGGTTTCATAATTGAACATTGAACTCATTTCATATGATGGGAGTTGTTG 399271 Query 160464 --GTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACT 160521 || || || | || ||| | | || || ||||| | ||||||||| | || | Sbjct 399272 AAGTGTA--GGGCGTTGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAGATACTTT 399329 Query 160522 GTATGAAGATGGAGAACAAGCAAATACCTT 160551 | ||||||| | || |||||||| || Sbjct 399330 ATTTGAAGATAGTGATGGTGCAAATACATT 399359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552458531282560