Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq8 143 4e-29
seq202 107 3e-18
seq1330 104 3e-17
seq801 104 3e-17
>seq8
Length=1797525
Score = 143 bits (158), Expect = 4e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | |||||| | |||| | ||||||| ||| |||| ||| ||
Sbjct 10363 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCC 10304
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| || | |||||||||||| ||||||||| ||| | || || || ||| || ||
Sbjct 10303 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 10244
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || ||| ||| | |||||| |||||| || ||||| ||
Sbjct 10243 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 10184
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| || |||||||||||| ||||| || ||| || |||||
Sbjct 10183 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142
>seq202
Length=624202
Score = 107 bits (118), Expect = 3e-18
Identities = 233/344 (68%), Gaps = 6/344 (2%)
Strand=Plus/Plus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
|| || |||||||| || || | |||||| |||| || | ||||| || || ||
Sbjct 31372 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 31431
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732
||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || ||
Sbjct 31432 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 31490
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790
||| || || || || ||||| || || | || ||| || | ||| | | |
Sbjct 31491 GAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAGC--CG 31548
Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
| ||||| || | ||||| | || |||||| || ||||| || || || || ||
Sbjct 31549 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCG 31608
Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910
| ||||| || || || || || || | || || || | | || || |||
Sbjct 31609 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 31668
Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954
|| || || |||||||| ||||| || ||||| || ||||| ||
Sbjct 31669 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 31712
>seq1330
Length=73179
Score = 104 bits (114), Expect = 3e-17
Identities = 232/344 (67%), Gaps = 6/344 (2%)
Strand=Plus/Minus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
|| || |||||||| || || | |||||| |||| || | ||||| || || ||
Sbjct 26765 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 26706
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732
||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || ||
Sbjct 26705 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 26647
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790
||| || || || || ||||| || || | || ||| || | ||| | | |
Sbjct 26646 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 26589
Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
| ||||| || | ||||| | || |||||| || || || || || || || ||
Sbjct 26588 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 26529
Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910
| ||||| || || || || || || | || || || | | || || |||
Sbjct 26528 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 26469
Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954
|| || || |||||||| ||||| || ||||| || ||||| ||
Sbjct 26468 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 26425
Score = 104 bits (114), Expect = 3e-17
Identities = 232/344 (67%), Gaps = 6/344 (2%)
Strand=Plus/Plus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
|| || |||||||| || || | |||||| |||| || | ||||| || || ||
Sbjct 46415 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 46474
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732
||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || ||
Sbjct 46475 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 46533
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790
||| || || || || ||||| || || | || ||| || | ||| | | |
Sbjct 46534 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 46591
Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
| ||||| || | ||||| | || |||||| || || || || || || || ||
Sbjct 46592 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 46651
Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910
| ||||| || || || || || || | || || || | | || || |||
Sbjct 46652 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 46711
Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954
|| || || |||||||| ||||| || ||||| || ||||| ||
Sbjct 46712 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 46755
>seq801
Length=188201
Score = 104 bits (114), Expect = 3e-17
Identities = 232/344 (67%), Gaps = 6/344 (2%)
Strand=Plus/Minus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
|| || |||||||| || || | |||||| |||| || | ||||| || || ||
Sbjct 11766 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 11707
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732
||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || ||
Sbjct 11706 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 11648
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790
||| || || || || ||||| || || | || ||| || | ||| | | |
Sbjct 11647 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 11590
Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
| ||||| || | ||||| | || |||||| || || || || || || || ||
Sbjct 11589 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 11530
Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910
| ||||| || || || || || || | || || || | | || || |||
Sbjct 11529 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 11470
Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954
|| || || |||||||| ||||| || ||||| || ||||| ||
Sbjct 11469 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 11426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686890064562480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |