Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 143 4e-29 seq202 107 3e-18 seq1330 104 3e-17 seq801 104 3e-17 >seq8 Length=1797525 Score = 143 bits (158), Expect = 4e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | |||| | ||||||| ||| |||| ||| || Sbjct 10363 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCC 10304 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||||||| ||| | || || || ||| || || Sbjct 10303 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 10244 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| |||||| || ||||| || Sbjct 10243 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 10184 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| || ||| || ||||| Sbjct 10183 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142 >seq202 Length=624202 Score = 107 bits (118), Expect = 3e-18 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | ||||| || || || Sbjct 31372 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 31431 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || || Sbjct 31432 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 31490 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || ||||| || || | || ||| || | ||| | | | Sbjct 31491 GAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGAGC--CG 31548 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || ||||| || || || || || Sbjct 31549 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCG 31608 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || || || || | || || || | | || || ||| Sbjct 31609 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 31668 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| ||||| || ||||| || ||||| || Sbjct 31669 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 31712 >seq1330 Length=73179 Score = 104 bits (114), Expect = 3e-17 Identities = 232/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | ||||| || || || Sbjct 26765 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 26706 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || || Sbjct 26705 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 26647 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || ||||| || || | || ||| || | ||| | | | Sbjct 26646 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 26589 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || || || || || || || || Sbjct 26588 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 26529 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || || || || | || || || | | || || ||| Sbjct 26528 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 26469 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| ||||| || ||||| || ||||| || Sbjct 26468 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 26425 Score = 104 bits (114), Expect = 3e-17 Identities = 232/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | ||||| || || || Sbjct 46415 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 46474 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || || Sbjct 46475 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 46533 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || ||||| || || | || ||| || | ||| | | | Sbjct 46534 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 46591 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || || || || || || || || Sbjct 46592 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 46651 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || || || || | || || || | | || || ||| Sbjct 46652 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 46711 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| ||||| || ||||| || ||||| || Sbjct 46712 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 46755 >seq801 Length=188201 Score = 104 bits (114), Expect = 3e-17 Identities = 232/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | ||||| || || || Sbjct 11766 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTC 11707 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || || Sbjct 11706 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 11648 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || ||||| || || | || ||| || | ||| | | | Sbjct 11647 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 11590 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || || || || || || || || Sbjct 11589 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 11530 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || || || || | || || || | | || || ||| Sbjct 11529 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 11470 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| ||||| || ||||| || ||||| || Sbjct 11469 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAA 11426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686890064562480