Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_027351.1 Length=147745 Score E Sequences producing significant alignments: (Bits) Value seq768 118 1e-21 >seq768 Length=200800 Score = 118 bits (130), Expect = 1e-21 Identities = 311/467 (67%), Gaps = 16/467 (3%) Strand=Plus/Plus Query 60063 AAAACCACGGGGTGTTAAAGAACGTATCAGTTTTGTTTTGGCAGACTTTCCTCCCAGCTT 60122 ||| ||||| || | ||| ||||||||||| || |||||||||||||| || |||||||| Sbjct 199716 AAATCCACGAGGAGATAAGGAACGTATCAGCTTCGTTTTGGCAGACTTGCCGCCCAGCTT 199775 Query 60123 TTTATGCTGTTCTGAGTAACCCTTC--GCTACCGCAACGGGCTTTGCGGGTGGCATTTTA 60180 || |||||| | |||| |||| || || | || ||||| |||||| | Sbjct 199776 GTTTTGCTGTGCAGAGT-ACCCGTCATGC-AGGTTTACAGGCTTCCTTTCTGGCATGACA 199833 Query 60181 AAACCATTACCCGTCCAAAGACACGTCTTTTTAGGGTATGAGTCTCGCGGATTAATATAC 60240 || | | ||||||||||| || || || ||||| | || ||||| ||||||| Sbjct 199834 AAGTCGTCCGAAGTCCAAAGACAAGTTTTCTTCGGGTAAGCATCGCGCGGCGCAATATAC 199893 Query 60241 TCAGGGAAGAACGGATGAACATCATCATGGGGTAGATAACCCCCATATTCATACGGATGG 60300 ||||| | || || | |||| | || ||||| || ||||| || | |||| | Sbjct 199894 ATCGGGAACCAGGGGTGTGCGTCATTCTCAGGAAGATAGCCGCCATACTCCCAGGGATTG 199953 Query 60301 AACATGTGGTTCGGTCTCCTCCATTTGGAGGACAGAACACTCACAGGGTTCTCTATCATG 60360 || |||||| | | | ||| || ||||| || || || || ||||| || ||| Sbjct 199954 AAAGTGTGGTCAGCCTTTCGCCAGGCTGATGACAGGACGCTAACCGGATTCTCAATGATG 200013 Query 60361 TATG-GACACCCGTACTTATCTCCTAACATTGCTGCAACCTTAGCTGTATTCACGGCTTT 60419 || | |||||| | |||| || | | || |||| | || || || ||||| Sbjct 200014 TAAGTCACACCCAGGC-TATCACCGATGTTCGCGGCAATCCGGGCGGTGGCAACAGCTTT 200072 Query 60420 GACCTGAAAAAGAGGGTC---TTT--GGCTGCTTTTGAGGCAAAATGAGCAGCACCGCTA 60474 |||| || || || || ||| | |||| |||||| || |||||| ||| Sbjct 200073 CTCCTGGAATAGCGGATCACGTTTACGCTTGCT-----GGCAAAGTGTCGAGCACCACTA 200127 Query 60475 ACTGCCATATCGGTACATGGCGGAAATGCAAAGATAATATCTGGCTT 60521 || |||| || || || ||||| || || | || | ||| ||||| Sbjct 200128 ACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGAAATCCGGCTT 200174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472643108307600