Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq202 114 1e-20 seq1330 109 4e-19 seq801 109 4e-19 >seq202 Length=624202 Score = 114 bits (126), Expect = 1e-20 Identities = 287/431 (67%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| |||||| || ||| ||||||| | | | | ||||| | | Sbjct 31799 GCCTTCTTCGCTGCCTCCGACGGCATTGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 31740 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || | | || || || || || ||||| || || ||||| || || || Sbjct 31739 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 31680 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || |||||||| || || | || ||||||||||| || |||||||||| Sbjct 31679 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 31620 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || | || | ||||| || || | || |||| | | || || | |||||||| Sbjct 31619 CGCCTCTTCCACGCGATCGACACCATCCCTTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 31561 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | |||||| | || ||||| | || ||| | || || ||||| ||||| Sbjct 31560 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGA 31501 Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || |||||||| || ||| | ||| || ||||||||| | || || || ||||| | Sbjct 31500 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 31442 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || |||| || || || ||| | || || || || ||||| || ||||| | Sbjct 31441 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 31382 Query 44274 TTGCTTGCTTG 44284 | || || ||| Sbjct 31381 TCGCGTGTTTG 31371 >seq1330 Length=73179 Score = 109 bits (120), Expect = 4e-19 Identities = 286/431 (66%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| ||| || || ||| ||||||| | | | | ||||| | | Sbjct 26338 GCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 26397 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || | | || || || || || ||||| || || ||||| || || || Sbjct 26398 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 26457 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || |||||||| || || | || ||||||||||| || |||||||||| Sbjct 26458 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 26517 Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || | || | ||||| || | || |||||| | | || || | |||||||| Sbjct 26518 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 26576 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | |||||| | || ||||| | || ||| | || || ||||| ||||| Sbjct 26577 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 26636 Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || |||||||| || ||| | ||| || ||||||||| | || || || ||||| | Sbjct 26637 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 26695 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || |||| || || || ||| | || || || || ||||| || ||||| | Sbjct 26696 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 26755 Query 44274 TTGCTTGCTTG 44284 | || || ||| Sbjct 26756 TCGCGTGTTTG 26766 Score = 109 bits (120), Expect = 4e-19 Identities = 286/431 (66%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| ||| || || ||| ||||||| | | | | ||||| | | Sbjct 46842 GCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 46783 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || | | || || || || || ||||| || || ||||| || || || Sbjct 46782 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 46723 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || |||||||| || || | || ||||||||||| || |||||||||| Sbjct 46722 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 46663 Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || | || | ||||| || | || |||||| | | || || | |||||||| Sbjct 46662 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 46604 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | |||||| | || ||||| | || ||| | || || ||||| ||||| Sbjct 46603 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 46544 Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || |||||||| || ||| | ||| || ||||||||| | || || || ||||| | Sbjct 46543 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 46485 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || |||| || || || ||| | || || || || ||||| || ||||| | Sbjct 46484 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 46425 Query 44274 TTGCTTGCTTG 44284 | || || ||| Sbjct 46424 TCGCGTGTTTG 46414 >seq801 Length=188201 Score = 109 bits (120), Expect = 4e-19 Identities = 286/431 (66%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| ||| || || ||| ||||||| | | | | ||||| | | Sbjct 11339 GCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 11398 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || | | || || || || || ||||| || || ||||| || || || Sbjct 11399 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 11458 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || |||||||| || || | || ||||||||||| || |||||||||| Sbjct 11459 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 11518 Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || | || | ||||| || | || |||||| | | || || | |||||||| Sbjct 11519 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 11577 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | |||||| | || ||||| | || ||| | || || ||||| ||||| Sbjct 11578 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 11637 Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || |||||||| || ||| | ||| || ||||||||| | || || || ||||| | Sbjct 11638 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 11696 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || |||| || || || ||| | || || || || ||||| || ||||| | Sbjct 11697 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 11756 Query 44274 TTGCTTGCTTG 44284 | || || ||| Sbjct 11757 TCGCGTGTTTG 11767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445430402910