Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq202 114 1e-20
seq1330 109 4e-19
seq801 109 4e-19
>seq202
Length=624202
Score = 114 bits (126), Expect = 1e-20
Identities = 287/431 (67%), Gaps = 4/431 (1%)
Strand=Plus/Minus
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915
|| || || ||||| |||||| || ||| ||||||| | | | | ||||| | |
Sbjct 31799 GCCTTCTTCGCTGCCTCCGACGGCATTGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 31740
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| || || | | || || || || || ||||| || || ||||| || || ||
Sbjct 31739 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 31680
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| || || |||||||| || || | || ||||||||||| || ||||||||||
Sbjct 31679 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 31620
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094
|| | || | ||||| || || | || |||| | | || || | ||||||||
Sbjct 31619 CGCCTCTTCCACGCGATCGACACCATCCCTTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 31561
Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154
| |||||| | || ||||| | || ||| | || || ||||| |||||
Sbjct 31560 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGA 31501
Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213
|| |||||||| || ||| | ||| || ||||||||| | || || || ||||| |
Sbjct 31500 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 31442
Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273
|||| || |||| || || || ||| | || || || || ||||| || ||||| |
Sbjct 31441 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 31382
Query 44274 TTGCTTGCTTG 44284
| || || |||
Sbjct 31381 TCGCGTGTTTG 31371
>seq1330
Length=73179
Score = 109 bits (120), Expect = 4e-19
Identities = 286/431 (66%), Gaps = 4/431 (1%)
Strand=Plus/Plus
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915
|| || || ||||| ||| || || ||| ||||||| | | | | ||||| | |
Sbjct 26338 GCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 26397
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| || || | | || || || || || ||||| || || ||||| || || ||
Sbjct 26398 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 26457
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| || || |||||||| || || | || ||||||||||| || ||||||||||
Sbjct 26458 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 26517
Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094
|| | || | ||||| || | || |||||| | | || || | ||||||||
Sbjct 26518 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 26576
Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154
| |||||| | || ||||| | || ||| | || || ||||| |||||
Sbjct 26577 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 26636
Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213
|| |||||||| || ||| | ||| || ||||||||| | || || || ||||| |
Sbjct 26637 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 26695
Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273
|||| || |||| || || || ||| | || || || || ||||| || ||||| |
Sbjct 26696 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 26755
Query 44274 TTGCTTGCTTG 44284
| || || |||
Sbjct 26756 TCGCGTGTTTG 26766
Score = 109 bits (120), Expect = 4e-19
Identities = 286/431 (66%), Gaps = 4/431 (1%)
Strand=Plus/Minus
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915
|| || || ||||| ||| || || ||| ||||||| | | | | ||||| | |
Sbjct 46842 GCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 46783
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| || || | | || || || || || ||||| || || ||||| || || ||
Sbjct 46782 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 46723
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| || || |||||||| || || | || ||||||||||| || ||||||||||
Sbjct 46722 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 46663
Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094
|| | || | ||||| || | || |||||| | | || || | ||||||||
Sbjct 46662 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 46604
Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154
| |||||| | || ||||| | || ||| | || || ||||| |||||
Sbjct 46603 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 46544
Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213
|| |||||||| || ||| | ||| || ||||||||| | || || || ||||| |
Sbjct 46543 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 46485
Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273
|||| || |||| || || || ||| | || || || || ||||| || ||||| |
Sbjct 46484 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 46425
Query 44274 TTGCTTGCTTG 44284
| || || |||
Sbjct 46424 TCGCGTGTTTG 46414
>seq801
Length=188201
Score = 109 bits (120), Expect = 4e-19
Identities = 286/431 (66%), Gaps = 4/431 (1%)
Strand=Plus/Plus
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915
|| || || ||||| ||| || || ||| ||||||| | | | | ||||| | |
Sbjct 11339 GCCTTCTTCGCTGCCTCCGATGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAG 11398
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| || || | | || || || || || ||||| || || ||||| || || ||
Sbjct 11399 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATC 11458
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| || || |||||||| || || | || ||||||||||| || ||||||||||
Sbjct 11459 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 11518
Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094
|| | || | ||||| || | || |||||| | | || || | ||||||||
Sbjct 11519 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 11577
Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154
| |||||| | || ||||| | || ||| | || || ||||| |||||
Sbjct 11578 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 11637
Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213
|| |||||||| || ||| | ||| || ||||||||| | || || || ||||| |
Sbjct 11638 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 11696
Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273
|||| || |||| || || || ||| | || || || || ||||| || ||||| |
Sbjct 11697 TGCCGGGACTGACTTTCTCCAACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 11756
Query 44274 TTGCTTGCTTG 44284
| || || |||
Sbjct 11757 TCGCGTGTTTG 11767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397445430402910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |