Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 100 4e-16 seq340 95.1 2e-14 seq12 93.3 5e-14 seq122 91.5 2e-13 >seq8 Length=1797525 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || |||| |||||||||||| || | || ||| ||||| | || Sbjct 10039 CTGAGGCCTTGGAGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 9980 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || ||||||| | ||||||||||| || ||| ||| || || | | Sbjct 9979 AGACATCAGGTGATATGTCTTGATAACAGAATCAATATCGTCCTTGTGAATCCCAACAGA 9920 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| | ||||| || || |||||| | |||| | || || || | || | Sbjct 9919 AACCCTCATTAGCATGTGTTGAGGTCTTTCCACAACCTTGCC-TTGAACCTTTAAGAGGT 9861 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||| || |||| ||||||||| || | ||| ||||||| Sbjct 9860 AAGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 9812 >seq340 Length=460696 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | | ||||| || |||| || | ||| ||||| | ||||| Sbjct 356509 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTTCAAAA 356568 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||||| |||||||| || ||||| || || | Sbjct 356569 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCC---A 356625 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | |||| || || || ||||| ||||||| || ||||| || Sbjct 356626 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAA 356685 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 ||| ||| || ||| | | ||| ||||| ||||| | ||||| || |||||| Sbjct 356686 GGTGCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCCAACA 356745 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCG 11777 ||||| || ||||| | | | || | || || ||||| ||| | |||||| | Sbjct 356746 AACATTTCAACAAATTCAGAACCTGA--AATGGAGAAAAATGGAACACCCGCTTCACCAG 356803 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || || || || |||||||| || ||||| Sbjct 356804 CAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 356840 >seq12 Length=1676446 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || | |||||||| || || || ||||||||||| | | Sbjct 85431 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTCTGCTCCCTCTCATCATT--CCCG 85488 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | ||| || || | | ||| | ||||||||||| |||||||| ||||| ||||| Sbjct 85489 CCGCCCATCCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCGATGAACACAATG 85548 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | || || | || || || || || ||||| || Sbjct 85549 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCCCCCACTCC 85607 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| |||||| || | | || | |||| || || ||| | || || Sbjct 85608 CACAAACAACTCCACGAACTCGGAAGCCGCGCACGAGAAAAACGGGGTCCCAGCCTCTCC 85667 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || | ||| || || || |||||||| || ||||| || |||| | | ||| || Sbjct 85668 GGCCACGGCGCGAGCCAGAAGGGTCTTGCCGGTACCAGGTGGACCCACCAAAAGACATCC 85727 Query 11836 TCGGGGGATCTTGGCACC 11853 | ||||| |||||||| Sbjct 85728 TTTTGGGATTTTGGCACC 85745 >seq122 Length=845292 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | | ||||| || |||| || | || ||||| | ||||| Sbjct 635870 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATGATACCAGTGTTGCCCTCAAAA 635811 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||||| |||||||| || ||||| || || | Sbjct 635810 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCC---A 635754 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | |||| || || || ||||| ||||||| || ||||| || Sbjct 635753 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAA 635694 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 ||| ||| || ||| | | ||| ||||| ||||| | ||||| ||||||||| Sbjct 635693 GGTGCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACA 635634 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 ||||| || ||||| | | | ||| || ||||| ||| | |||||| || Sbjct 635633 AACATTTCAACAAACTCAGAACCTGAGATGGAGAAAAATGGAACACCAGCTTCACCAGCA 635574 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || |||||||| || || || Sbjct 635573 ATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCCGG 635539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014870427200